The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
* maximises the ‘shelf life’ and utility of data generated by SysMO;
* provides an integrated platform for the dissemination of the results of the SysMO projects to the scientific community; and
* facilitates standardization of practices in Systems Biology for the interfacing of modelling and experimentation.
We follow several key principles: * exploit what is already available, both within the consortium and outside it, and do not reinvent; * identify the least we can do to make a benefit and do this incrementally.
test
Programme: Dummy programme
SEEK ID: https://testing.sysmo-db.org/projects/12
Public web page: http://www.sysmo-db.org/
Organisms: Lactic acid bacteria, Agapornis
FAIRDOM PALs: Stuart Owen
Project created: 15th Jan 2009
Related items
- People (22)
- Programmes (1)
- Institutions (6)
- Investigations (15+10)
- Studies (29+13)
- Assays (224+15)
- Strains (9)
- Data files (383+48)
- Models (52+21)
- SOPs (27+12)
- Publications (33)
- Presentations (19+17)
- Events (3+1)
- Documents (2+3)
- Sample types (6+9)
- Samples (14+3021)
- Workflows (0+1)
- Collections (1+4)
Projects: SysMO DB
Institutions: HITS gGmbH
Projects: SysMO DB, <script>alert('xss-project-title')</script> & Test Project, Stuarts Project, Gatekeeper test, Xiaoming Test, testing project deletion
Institutions: School of Computer Science, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, CSIC Vigo, HITS gGmbH, Manchester Centre for Integrative Systems Biology, University of Manchester
Maybe I should buy a boat
Projects: SysMO DB
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester
Projects: rafael test project, Another test project, SysMO DB, Project with gates, flora test project (2)
Institutions: institute, Another Institute, VIB, research institute
Projects: Olga's test project, SysMO DB
Institutions: HITS gGmbH
Projects: SysMO DB
Institutions: School of Computer Science, University of Manchester
Expertise: Software Engineering
Tools: Data Management, Databases, Workflows
Professor of Computer Science
Projects: SysMO DB
Institutions: School of Computer Science, University of Manchester
Projects: SysMO DB, Xiaoming Test, Xiaoming API TEST, whomingbird's test
Institutions: HITS gGmbH, <script>alert('xss-institution-title')</script> & Test Institution
Expertise: abc_hu
Thy-1
Projects: SysMO DB
Institutions: HITS gGmbH
Projects: SysMO DB, flora test project (2), Vahid's project
Institutions: VIB
Projects: SysMO DB, Xiaoming Test, Olga's test project, project created by programme admin Olga
Institutions: HITS gGmbH
Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics
Tools: Databases, data modeling, ontology
Projects: SysMO DB
Institutions: HITS gGmbH
Projects: SysMO DB
Institutions: HITS gGmbH
Expertise: Software Engineering, Information Retrieval
Tools: Data Management, Databases, Java, Spring, Groovy on Rails
I am leader of the SDBV group at the EML Research gGmbH.
Projects: SysMO DB, BaCell-SysMO, SulfoSys, SysMOLAB, <script>alert('xss-project-title')</script> & Test Project, Refinery NDD, Gatekeeper Testing Project, Hadas' project for Stuart, SilicoTryp, Gatekeeper test, Dummy project, Taverna Project, testing assigning organisms, Xiaoming Test, test, flora test project (2)
Institutions: HITS gGmbH, DSM Nutritional Products Ltd., Manchester Centre for Integrative Systems Biology, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, School of Computer Science, University of Manchester, Autonomous University of Barcelona, Helmholtz Centre for Infection Research Braunscheig, ETH Zurich
https://orcid.org/0000-0003-2130-0865Expertise: talking, walking, Data Management, Software Engineering, Software Architecture, Repositories, Microbiology, fishing, Proteomics
Tools: mouth, legs, Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, Microarray analysis, SBML
The Senior Research Software Engineer on SysMO-DB team.
Developing and testing SysMO SEEK, WorkflowHub and RightField.
search test ... Thy‐1 restricts steatosis Böät
Projects: COSMIC, KOSMOBAC, Project created by a programme admin, Gatekeeper Testing Project, Taverna Project, SysMO DB, Hadas' project for Stuart
Institutions: Chalmers Institute of Technology, CSIC Vigo, Institut National de la Recherche Agronomique, CSIC Granada, HITS gGmbH, Autonomous University of Barcelona
Projects: PSYSMO, MOSES, SysMOLAB, SulfoSys, SysMO DB
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester, University of Stellenbosch, HITS gGmbH
Projects: SysMO DB
Institutions: School of Computer Science, University of Manchester
search test - Boat
Snapshots: No snapshots
Snapshots: Snapshot 1
Should be at least public
Snapshots: No snapshots
Snapshots: No snapshots
to be added after creation
Snapshots: No snapshots
Snapshots: Snapshot 1, Snapshot 2
to try and reproduce snapshot view problem
Submitter: Stuart Owen
Studies: Public Study for OPSK-457
Assays: Assay for OPSK-457, Public Assay for OPSK-457, testing extraction title
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3, Snapshot 4, Snapshot 5
The investigation entails the construction and validation of a detailed mathematical model for glycolysis of the malaria parasite Plasmodium falciparum in the blood stage trophozoite form.
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
Submitter: Stuart Owen
Studies: a test study, fffff
Assays: Assay with a SOP, Assay with one strain, Modelling Assay with a SOP, Patient tests, jyggiihhiuhiuhiuh, test publish, testing assay and techno types, testing flux balance, testing href in description, testing making an assay
Snapshots: No snapshots
alert("xss-investigation-desc")
Submitter: Stuart Owen
Studies: Study XSS Check <script>alert("xss-study-title")</script>
Snapshots: No snapshots
Submitter: Stuart Owen
Assays: Test Assay for Publishing, Testing assay for project browser thingy, demo modelling analysis, ttt
Snapshots: No snapshots
This Investigation was performed by SySMO DB team together with PALS in order to crete methods and best practices for capturing experimental data.
Submitter: Olga Krebs
Studies: Metabolomics data capture
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
Cell growth underlies many key cellular and developmental processes, yet a limited number of studies have been carried out on cell-growth regulation. Comprehensive studies at the transcriptional, proteomic and metabolic levels under defined controlled conditions are currently lacking.
This investigation shows public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1) Organism: Saccharomyces Cerevisiae
Submitter: Katy Wolstencroft
Studies: A time course analysis of transcription response in yeast treated with ..., Can yeast glycolysis be understood in terms of in vitro kinetics of the ..., test study
Assays: Changes in flux on the metabolome, Changes in flux on the proteome, Changes in flux on the transcriptome, Glycolysis in Saccharomyces cerevisiae, Time course analysis of transcription, Transcriptional profiling, new assay from data file, test assay, test for biol problem
Snapshots: No snapshots
An investigation into the control mechanisms of glycolytic flux in Lactococcus lactis.
This investigation represents the data and models published by Hoefnagel et al in JWS Online and in M.H.N. Hoefnagel, J. Hugenholtz and J.L. SnoepMol. Biol. Reports 29, 157-161 (2002)
Submitter: Jacky Snoep
Studies: The effects of Redox Charge on Glycolytic Flux
Assays: Time dependent responses of glycolytic intermediates in a detailed glyco..., example assay
Snapshots: No snapshots
Glycerol, a major by-product of ethanol fermentation by Saccharomyces cerevisiae, is of significant importance to the wine, beer, and ethanol production industries. This investigation aims to gain a clearer understanding of and to quantify the extent to which parameters of the pathway affect glycerol flux in S. cerevisiae.
This investigation represents the data and models submitted to JWS online by Cronwright et al (http://jjj.biochem.sun.ac.za/cgi-bin/getMoreInfo.py?modeldir=cronwright) and ...
Submitter: Katy Wolstencroft
Studies: Glycerol Synthesis Pathway
Assays: Extracellular Glycerol, Glycerol Synthesis Model construction, Intracellular Metabolites, fffff, test assay
Snapshots: No snapshots
I want to freeze this
Snapshots: Snapshot 1
update
Submitter: Stuart Owen
Investigation: Investigation with some private bits
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Snapshots: No snapshots
ttt
Snapshots: No snapshots
This study includes the experimental data for model validation and the model predictions of that data set.
Submitter: Stuart Owen
Investigation: Glucose metabolism in Plasmodium falciparum tro...
Assays: GLC incubation
Snapshots: No snapshots
Snapshots: No snapshots
alert("xss-study-title")
Submitter: Stuart Owen
Investigation: Inv XSS Check <script>alert("xss-investigation-...
Snapshots: No snapshots
Dear SEEK users, this Assay is just an example Excell sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat
.
Submitter: Olga Krebs
Assay type: Amplification
Technology type: Mass Spectrometry
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Organisms: Callimico goeldii
SOPs: new sop
Data files: Excell sheet template : concentrations of intra..., Treatments Test 1, Umlaut in sheet names from Excel, Umlaut only in cells, a_transcriptome from BII-S-1, test plot data
Snapshots: No snapshots
Assay to measure gene expression of yeast saccharomyces cerevisiae under different nutrient limitations
Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur
This data is public data taken from the BioInvestigation Index.
(http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)
Submitter: Katy Wolstencroft
Assay type: Transcriptional Profiling
Technology type: Microarray
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Organisms: Callimico goeldii
SOPs: COGEME_extraction_mod-chemostat_v1
Data files: a_transcriptome from BII-S-1
Snapshots: No snapshots
Assay to measure metabolites of yeast saccharomyces cerevisiae under different nutrient limitations
Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur
This data is public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)
Submitter: Katy Wolstencroft
Assay type: Metabolite Profiling
Technology type: Mass Spectrometry
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Assay to measure protein expression in yeast saccharomyces cerevisiae under different nutrient limitations
Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur
This data is public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)
Submitter: Katy Wolstencroft
Assay type: Protein Expression Profiling
Technology type: Mass Spectrometry
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Organisms: Callimico goeldii
SOPs: No SOPs
Data files: a_proteome from BII-S-1
Snapshots: No snapshots
Assay for transcriptional profiling time course in yeast treated with rapamycin
This is public data from the BioInvestigation Index (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-2)
Submitter: Katy Wolstencroft
Assay type: Transcriptional Profiling
Technology type: Microarray
Investigation: Growth control of the eukaryote cell: a systems...
Organisms: Callimico goeldii
SOPs: 1 hidden item
Data files: a_microarray from BII-S-2
Snapshots: No snapshots
Glycolysis in Saccharomyces cerevisiae
Submitter: Guest
Biological problem addressed: Metabolism
Investigation: Growth control of the eukaryote cell: a systems...
Organisms: Callimico goeldii
Models: Teusink Model
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay for transcriptional profiling time course in yeast
Submitter: Guest
Assay type: Transcriptomics
Technology type: Microarray
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: test pdf, test pdf, test pdf file
Snapshots: No snapshots
Detailed glycolytic model in Lactococcus lactis
Submitter: Katy Wolstencroft
Biological problem addressed: Metabolic Network
Investigation: Glycolitic Flux in Lactococcus lactis
Organisms: Lactococcus lactis
Models: Lactococcus lactis glycolysis
SOPs: No SOPs
Data files: Neves_timeSeries
Snapshots: No snapshots
A kinetic model of the glycerol synthesis pathway has been constructed. Kinetic parameters were collected from published values. Maximal enzyme activities and intracellular effector concentrations were determined experimentally.
Submitter: Katy Wolstencroft
Biological problem addressed: Metabolism
Investigation: Glycerol Synthesis in Saccharomyces cerevisiae
Study: Glycerol Synthesis Pathway
Organisms: Callimico goeldii
Models: Metabolic Control Analysis of Glycerol Synthesi...
SOPs: No SOPs
Data files: Cronwright Parameter Data, SysMO template
Snapshots: No snapshots
An assay to measure exttracellular glycerol using HPLC
Submitter: Katy Wolstencroft
Assay type: Metabolite Profiling
Technology type: HPLC
Investigation: Glycerol Synthesis in Saccharomyces cerevisiae
Study: Glycerol Synthesis Pathway
Organisms: Callimico goeldii
SOPs: No SOPs
Data files: random datafile and 1 hidden item
Snapshots: No snapshots
Intracellular metabolite concentrations were determined enzymatically by measuring the oxidation or reduction of NADH or NAD+, respectively, at 340 nm in a Beckman Coulter DU640 spectrophotometer
Submitter: Katy Wolstencroft
Assay type: Intracellular Metabolite Concentration
Technology type: Enzymatic Activity Measurements
Investigation: Glycerol Synthesis in Saccharomyces cerevisiae
Study: Glycerol Synthesis Pathway
Organisms: Callimico goeldii
SOPs: No SOPs
Data files: Cronwright Parameter Data
Snapshots: No snapshots
Submitter: Quyen Yamanaka
Biological problem addressed: Model Analysis Type
Investigation: Glycolitic Flux in Lactococcus lactis
Study: 1 hidden item
Organisms: No organisms
Models: A consensus yeast metabolic network reconstruct..., Lin3, showing attribution, tset model
SOPs: a test file
Data files: link to google doc, test speed, test speed 2
Snapshots: No snapshots
Submitter: Lihua Angel
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Submitter: Quyen Yamanaka
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Glycerol Synthesis in Saccharomyces cerevisiae
Study: 1 hidden item
Organisms: Bacillus subtilis : NCIB3610 (wild-type / wild-type)
SOPs: No SOPs
Data files: Lactis 6, Treatments Test 1
Snapshots: No snapshots
ttt
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: inv1
Study: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Glycerol Synthesis in Saccharomyces cerevisiae
Study: Glycerol Synthesis Pathway
Organisms: Clostridium acetobutylicum : ATCC824 (wild-type / wild-type)
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: inv1
Study: study1
Organisms: No organisms
SOPs: COGEME_extraction_mod-chemostat_v1
Data files: Glycerol Synthesis dummy validation data, dummy datafile, test plot data
Snapshots: No snapshots
Submitter: Stuart Owen
Biological problem addressed: Model Analysis Type
Investigation: inv1
Study: 1 hidden item
Organisms: No organisms
Models: Model with picture added twice (as a file and a..., Potato
SOPs: new sop
Data files: a_metabolome_BII-S-1, a_microarray from BII-S-2
Snapshots: No snapshots
Submitter: Quyen Yamanaka
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Organisms: Lactic Acid Bacteria : lactic test (wild-type / wild-type)
SOPs: No SOPs
Data files: Lactis 6, Quyen data, smashies
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: Quyen's sop
Data files: SysMO template, a_microarray from BII-S-2, dummy 2 and 1 hidden item
Snapshots: No snapshots
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Submitter: Olga Krebs
Provider Name: Not specified
Provider's strain ID: some id
Organism: Bacillus subtilis
Genotypes: del ase
Phenotypes: wild-type
Comment: ss
Submitter: Quyen Yamanaka
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Bacillus subtilis
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Submitter: Stuart Owen
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Escherichia coli
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Submitter: Quyen Yamanaka
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Callimico goeldii
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Genotypes: ins ftrg
Phenotypes: wild-type
Comment: Not specified
Submitter: queeny Nguyen
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Bacillus subtilis
Genotypes: del ase
Phenotypes: dasfadsf
Comment: ss
Submitter: queeny Nguyen
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Bacillus subtilis
Genotypes: del ase
Phenotypes: dasfadsf
Comment: ss
Submitter: Quyen Yamanaka
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Callimico goeldii
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
123
Thy-1
Creators: None
Submitter: Finn Bacall
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuey Owen
Submitter: Stuey Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
This is the description
Creators: Jacky Snoep, John Smith, Jane Smith
Submitter: Jacky Snoep
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: 1 hidden item
This is the description
Creators: Jacky Snoep, John Smith, Jane Smith
Submitter: Jacky Snoep
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: 1 hidden item
This is the description
Creators: Jacky Snoep, John Smith, Jane Smith
Submitter: Jacky Snoep
Investigations: 1 hidden item
Studies: 1 hidden item
Assays: 1 hidden item
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creators: None
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
banana carrot - testing markdown indexing
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Xiaoming Hu
Submitter: Xiaoming Hu
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
BACKGROUND: The behaviour of biological systems can be deduced from their mathematical models. However, multiple sources of data in diverse forms are required in the construction of a model in order to define its components and their biochemical reactions, and corresponding parameters. Automating the assembly and use of systems biology models is dependent upon data integration processes involving the interoperation of data and analytical resources. RESULTS: Taverna workflows have been developed ...
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: JWS Online
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Glycolytic model for Plasmodium falciparum; closed system
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: Glucose metabolism in Plasmodium falciparum tro..., Methods for interrelating 'omics data
Studies: Metabolomics data capture, Model validation
Assays: GLC incubation, GLC incubation
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Franco Boudrot
Submitter: Franco Boudrot
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Lihua Angel
Submitter: Lihua Angel
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: Glycolitic Flux in Lactococcus lactis
Studies: 1 hidden item
Assays: example assay
Creator: Stuey Owen
Submitter: Stuey Owen
Model type: Partial differential equations (PDE)
Model format: BioPAX
Environment: JWS Online
Organism: Enterococcus faecalis
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Potato model taken from JWS Online: http://jjj.mib.ac.uk/
Testing notification email
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: JWS Online
Organism: Not specified
Investigations: An example Investigation with Scale, inv1
Studies: a test study and 1 hidden item
Creators: None
Submitter: Deleted submitter
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Model for testing
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Partial differential equations (PDE)
Model format: SBML
Environment: Not specified
Organism: Callimico goeldii
Investigations: test investigation
Studies: 1 hidden item
Assays: 1 hidden item
Genomic data allow the large-scale manual or semi-automated assembly of metabolic network reconstructions, which provide highly curated organism-specific knowledge bases. Although several genome-scale network reconstructions describe Saccharomyces cerevisiae metabolism, they differ in scope and content, and use different terminologies to describe the same chemical entities. This makes comparisons between them difficult and underscores the desirability of a consolidated metabolic network that ...
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
UI allows multiple creators, but do they all get added?
Creators: Stuart Owen, Finn Bacall, Finn Bacall, Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
SOP for the determination of external metabolites (Glc, Pyr, Gly, Lac) in intact trophozoite incubations, and for the determination of intracellular metabolite concentrations.
Creators: Stuart Owen, Finn Bacall
Submitter: Stuart Owen
adsfa
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: queeny Nguyen
Submitter: queeny Nguyen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
alert("xss-sop-desc");
Creators: Stuart Owen, Creator <script>alert("xss-sop-creator");</script>
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: queeny Nguyen
Submitter: queeny Nguyen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Investigations: Glycolitic Flux in Lactococcus lactis, I1
Studies: Study and 1 hidden item
Assays: Assay 1, example assay
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Lihua Angel
Submitter: Lihua Angel
Creator: Lihua Angel
Submitter: Lihua Angel
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuey Owen
Submitter: Stuey Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
An aerobic chemostat culture (above 70% of oxygen saturation) was set up at the specified dilution rate (fraction culture volume per hour; equal to growth rate in steady-state) with a working volume of 1 litre in a 1.5 litre fermenter (Applikon, The Netherlands) using the specified synthetic defined nutrient-limited medium according to the description of Baganz et al., (1997)
Creator: Katy Wolstencroft
Submitter: Katy Wolstencroft
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Lihua Angel
Submitter: queeny Nguyen
Investigations: Methods for interrelating 'omics data, inv1 and 1 hidden item
Studies: Metabolomics data capture and 2 hidden items
Assays: Excel template for metabolomics data, demo modelling analysis and 1 hidden item
edited to test subscription emails
Creators: None
Submitter: Quyen Yamanaka
Investigations: An example Investigation with Scale, Methods for interrelating 'omics data
Studies: Metabolomics data capture, a test study
Assays: Assay with a SOP, GLC incubation, Modelling Assay with a SOP
Biomass samples (20ml) were taken via the sample port of the Applikon fermenters. The cells were pelleted by centrifugation for 5min at 5000rpm. The supernatant was removed and the RNA pellet resuspended in the residual medium to form a slurry. This was added in a dropwise manner directly into a 5ml Teflon flask (B. Braun Biotech, Germany) containing liquid nitrogen and a 7mm-diameter tungsten carbide ball.
Taken from ArrayExpress: http://www.ebi.ac.uk/microarray-as/ae/browse.html?keywords=E-MEXP-115 ...
Creator: Katy Wolstencroft
Submitter: Katy Wolstencroft
Investigations: Growth control of the eukaryote cell: a systems..., inv1
Studies: study1 and 1 hidden item
Assays: Changes in flux on the transcriptome, Testing assay for project browser thingy
Abstract (Expand)
Authors: M. L. Neal, M. Konig, D. Nickerson, G. Misirli, R. Kalbasi, A. Drager, K. Atalag, V. Chelliah, M. T. Cooling, D. L. Cook, S. Crook, M. de Alba, S. H. Friedman, A. Garny, J. H. Gennari, P. Gleeson, M. Golebiewski, M. Hucka, N. Juty, C. Myers, B. G. Olivier, H. M. Sauro, M. Scharm, J. L. Snoep, V. Toure, A. Wipat, O. Wolkenhauer, D. Waltemath
Date Published: 22nd Mar 2019
Publication Type: Booklet
PubMed ID: 30462164
Citation: Brief Bioinform. 2019 Mar 22;20(2):540-550. doi: 10.1093/bib/bby087.
Abstract
Editor:
Date Published: 1st Sep 2017
Publication Type: Journal
DOI: 10.1111/ejn.13472
Citation: Eur J Neurosci 46(5)
Abstract
Authors: Smijin Soman, Marcus Keatinge, Mahsa Moein, Marc Da Costa, Heather Mortiboys, Alexander Skupin, Sreedevi Sugunan, Michal Bazala, Jacek Kuznicki, Oliver Bandmann
Date Published: 24th Nov 2016
Publication Type: Journal
DOI: 10.1111/ejn.13473
Citation: Eur J Neurosci 45(4):528-535
Abstract
Authors: Dagmar Waltemath, Jonathan R Karr, Frank T Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K Aranganathan, Kambiz Baghalian, Arne T Bittig, Paulo E Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S Costa, Joseph Cursons, Tobias Czauderna, Arthur P Goldberg, Harold F Gomez, Jens Hahn, Tuure Hameri, Daniel F Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knupfer, Matthias Konig, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Toure, Jannis Uhlendorf, Thawfeek M Varusai, Leandro H Watanabe, Florian Wendland, Markus Wolfien, James T Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
Date Published: 24th Sep 2016
Publication Type: Not specified
Abstract
Authors: Gerald Penkler, Francois du Toit, Waldo Adams, Marina Rautenbach, Daniel C. Palm, David D. van Niekerk, Jacky L. Snoep
Date Published: 1st Apr 2015
Publication Type: Not specified
DOI: 10.1111/febs.13237
Citation: FEBS J 282(8) : 1481
Abstract
Authors: Minsuk Kim, Jeong Sang Yi, Joonwon Kim, Ji-Nu Kim, Min Woo Kim, Byung-Gee Kim
Date Published: 1st Sep 2014
Publication Type: Not specified
Citation: Biotechnology Journal 9(9) : 1185
Abstract (Expand)
Authors: N. Scichilone, F. Braido, S. Taormina, E. Pozzecco, A. Paterno, I. Baiardini, V. Casolaro, G. W. Canonica, V. Bellia
Date Published: 31st Aug 2013
Publication Type: Not specified
PubMed ID: 24073408
Citation:
Abstract (Expand)
Authors: Jayesh Sanmukhani, Vimal Satodia, Jaladhi Trivedi, Tejas Patel, Deepak Tiwari, Bharat Panchal, Ajay Goel, Chandra Bhanu Tripathi
Date Published: 9th Jul 2013
Publication Type: Not specified
PubMed ID: 23832433
Citation:
Abstract (Expand)
Authors: Emanuel Gonçalves, Joachim Bucher, Anke Ryll, Jens Niklas, Klaus Mauch, Steffen Klamt, Miguel Rocha, Julio Saez-Rodriguez
Date Published: 4th Jun 2013
Publication Type: Not specified
PubMed ID: 23525368
Citation:
Abstract
Authors: K. Wolstencroft, R. Haines, D. Fellows, A. Williams, D. Withers, S. Owen, S. Soiland-Reyes, I. Dunlop, A. Nenadic, P. Fisher, J. Bhagat, K. Belhajjame, F. Bacall, A. Hardisty, A. Nieva de la Hidalga, M. P. Balcazar Vargas, S. Sufi, C. Goble
Date Published: 2nd May 2013
Publication Type: Not specified
DOI: 10.1093/nar/gkt328
Citation:
Abstract (Expand)
Authors: Andreas Petzold, Kathrin Reichwald, Marco Groth, Stefan Taudien, Nils Hartmann, Steffen Priebe, Dmitry Shagin, Christoph Englert, Matthias Platzer
Date Published: 16th Mar 2013
Publication Type: Not specified
PubMed ID: 23496936
Citation:
Abstract (Expand)
Authors: J. C. Fuller, P. Khoueiry, H. Dinkel, K. Forslund, A. Stamatakis, J. Barry, A. Budd, T. G. Soldatos, K. Linssen, A. M. Rajput
Date Published: 15th Mar 2013
Publication Type: Not specified
PubMed ID: 23492829
Citation:
Abstract
Authors: Firstname Lastname, Firstname Lastname, Matthew Horridge, Simon Jupp, Firstname Lastname, Firstname Lastname, Firstname Lastname, Wolfgang Mueller, Robert Stevens, Firstname Lastname
Date Published: 1st Feb 2013
Publication Type: Not specified
DOI: 10.1002/cpe.2941
Citation:
Abstract
Editor:
Date Published: 2013
Publication Type: Not specified
DOI: 10.1038/psp.2012.22
Citation:
Abstract
Editor:
Date Published: 2013
Publication Type: Not specified
DOI: 10.1007/978-3-642-41338-4_14
Citation:
Abstract
Authors: Martin Golebiewski, Martin Golebiewski
Date Published: 7th Oct 2011
Publication Type: Not specified
Citation:
Abstract (Expand)
Authors: A. Schroder, J. Wollnik, C. Wrzodek, A. Drager, M. Bonin, O. Burk, M. Thomas, W. E. Thasler, U. M. Zanger, A. Zell
Date Published: 14th Jul 2011
Publication Type: Not specified
PubMed ID: 21757465
Citation:
Abstract
Authors: M. Carmen Herrera, Estrella Duque, José J. RodrÃguez-Herva, Ana M. Fernández-Escamilla, Juan L. Ramos
Date Published: 2010
Publication Type: Not specified
DOI: 10.1111/j.1462-2920.2009.02124.x
Citation:
Abstract (Expand)
Authors: Firstname Lastname, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister
Date Published: 17th Nov 2009
Publication Type: Not specified
PubMed ID: 19933161
Citation:
Abstract (Expand)
Authors: Damian Smedley, Morris A Swertz, Firstname Lastname, Glenn Proctor, Michael Zouberakis, Jonathan Bard, John M Hancock, Paul Schofield
Date Published: 30th Dec 2008
Publication Type: Not specified
PubMed ID: 19112082
Citation:
Testing as a full link, like: http://www.slideshare.net/FAIRDOM/making-your-data-good-enough-for-sharing?qid=e33b73c1-694b-4ada-9808-1b75e60fde62&v=qf1&b=&from_search=1
Creator: Stuart Owen
Submitter: Stuart Owen
David's presentation from PALs meeting in Heidelberg
Creators: Olga Krebs, David Jones, Quyen Yamanaka, Miss X
Submitter: Olga Krebs
Start Date: 18th Oct 2011
End Date: 20th Oct 2011
Event Website: Not specified
Country: Afghanistan
City: Not specified
aaa
Start Date: 7th Sep 2011
End Date: 29th Sep 2011
Event Website: Not specified
Country: Bangladesh
City: Not specified
Start Date: 26th Aug 2011
End Date: 27th Aug 2011
Event Website: Not specified
Country: Germany
City: Heidelberg
Using Transparent Background (Square Version, SVG) from https://fair-dom.org/mediakit
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
to test new fearures in SEEK version 1.12.0 this sampletype for Cell Culture description
sample_ID (String) *, Lab sample ID (String) *, parent sample (Registered Sample - OlgasTestType) , Age at sampling (Integer) ( wk ) , Starting date (Date time) *, Gender (Controlled Vocabulary - Gender) *, SOP used for culturing (Web link)
Olgas test collection
Maintainers: Olga Krebs, Ulrike Wittig, Stuart Owen, OlgaII KrebsII
Number of items: 4
Tags: Not specified