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An investigation into the control mechanisms of glycolytic flux in Lactococcus lactis.
This investigation represents the data and models published by Hoefnagel et al in JWS Online and in M.H.N. Hoefnagel, J. Hugenholtz and J.L. SnoepMol. Biol. Reports 29, 157-161 (2002)
SEEK ID: https://testing.sysmo-db.org/investigations/3
Projects: SysMO DB
Investigation position:
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Created: 8th Aug 2011 at 13:47
Last updated: 10th Nov 2011 at 17:14
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- People (1)
- Programmes (1)
- Projects (1)
- Studies (1+1)
- Assays (2+1)
- Data files (6)
- Models (5)
- SOPs (1)
- Publications (2)
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
A study which combines mathematical modelling and experimental measurements to determine the effects of redox charge on glycolytic flux
Submitter: Jacky Snoep
Investigation: Glycolitic Flux in Lactococcus lactis
Assays: Time dependent responses of glycolytic intermediates in a detailed glyco...
Snapshots: No snapshots
Detailed glycolytic model in Lactococcus lactis
Submitter: Katy Wolstencroft
Biological problem addressed: Metabolic Network
Investigation: Glycolitic Flux in Lactococcus lactis
Organisms: Lactococcus lactis
Models: Lactococcus lactis glycolysis
SOPs: No SOPs
Data files: Neves_timeSeries
Snapshots: No snapshots
Submitter: Quyen Yamanaka
Biological problem addressed: Model Analysis Type
Investigation: Glycolitic Flux in Lactococcus lactis
Study: 1 hidden item
Organisms: No organisms
Models: A consensus yeast metabolic network reconstruct..., Lin3, showing attribution, tset model
SOPs: a test file
Data files: link to google doc, test speed, test speed 2
Snapshots: No snapshots
link to google doc
Creators: Stuart Owen, baby boy, what is this?????????????
Submitter: Olga Krebs
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Excell sheet template : concentrations of intracellular metabolites
Creator: Olga Krebs
Submitter: Olga Krebs
Investigations: Glycolitic Flux in Lactococcus lactis, Growth control of the eukaryote cell: a systems..., Methods for interrelating 'omics data
Studies: Metabolomics data capture, The effects of Redox Charge on Glycolytic Flux, test study
Assays: Excel template for metabolomics data, test for biol problem and 1 hidden item
Creator: Jacky Snoep
Submitter: Katy Wolstencroft
Investigations: Glycolitic Flux in Lactococcus lactis
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: Glycolitic Flux in Lactococcus lactis, Methods for interrelating 'omics data
Studies: Metabolomics data capture, The effects of Redox Charge on Glycolytic Flux
Assays: Excel template for metabolomics data and 1 hidden item
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: Glycolitic Flux in Lactococcus lactis
Studies: 1 hidden item
Assays: example assay
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Model type: Partial differential equations (PDE)
Model format: SBML
Environment: JWS Online
Organism: Not specified
Investigations: Glycolitic Flux in Lactococcus lactis
Studies: 1 hidden item
Assays: example assay
Genomic data allow the large-scale manual or semi-automated assembly of metabolic network reconstructions, which provide highly curated organism-specific knowledge bases. Although several genome-scale network reconstructions describe Saccharomyces cerevisiae metabolism, they differ in scope and content, and use different terminologies to describe the same chemical entities. This makes comparisons between them difficult and underscores the desirability of a consolidated metabolic network that ...
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: Glycolitic Flux in Lactococcus lactis
Studies: 1 hidden item
Assays: example assay
Creator: Franco Boudrot
Submitter: Franco Boudrot
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: An example Investigation with Scale, Glycolitic Flux in Lactococcus lactis
Studies: a test study and 1 hidden item
Assays: Modelling Assay with a SOP, example assay
Detailed kinetic model for glycolysis of L. lactis. The model is basically the same model as that published by Hoefnagel et al 2002 (Mol. Biol. Reports 29, 157-161). The change made to the model is to make external glucose a variable such that a glucose pulse can be simulated.
Creators: Jacky Snoep, Ana Rute Neves
Submitter: Katy Wolstencroft
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: Not specified
Organism: Lactococcus lactis
Investigations: Glycolitic Flux in Lactococcus lactis, inv1
Studies: The effects of Redox Charge on Glycolytic Flux and 1 hidden item
Assays: Time dependent responses of glycolytic intermed... and 1 hidden item
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Investigations: Glycolitic Flux in Lactococcus lactis, I1
Studies: Study and 1 hidden item
Assays: Assay 1, example assay
Abstract
Authors: Martin Golebiewski, Martin Golebiewski
Date Published: 7th Oct 2011
Publication Type: Not specified
Citation:
Abstract (Expand)
Authors: Ana Rute Neves, Rita Ventura, Nahla Mansour, Claire Shearman, Michael J Gasson, Christopher Maycock, Ana Ramos, Helena Santos
Date Published: 13th May 2002
Publication Type: Not specified
PubMed ID: 12011086
Citation: