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This Investigation was performed by SySMO DB team together with PALS in order to crete methods and best practices for capturing experimental data.
SEEK ID: https://testing.sysmo-db.org/investigations/1
Projects: SysMO DB
Investigation position:
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Created: 10th Jun 2009 at 17:09
Last updated: 10th Nov 2011 at 17:14
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- People (1)
- Programmes (1)
- Projects (1)
- Studies (1+1)
- Assays (2+1)
- Data files (8)
- Models (1)
- SOPs (4)
- Publications (1)
Projects: SysMO DB, Xiaoming Test, Olga's test project, project created by programme admin Olga
Institutions: HITS gGmbH
Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics
Tools: Databases, data modeling, ontology
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
Submitter: Olga Krebs
Investigation: Methods for interrelating 'omics data
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
Dear SEEK users, this Assay is just an example Excell sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat
.
Submitter: Olga Krebs
Assay type: Amplification
Technology type: Mass Spectrometry
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Organisms: Callimico goeldii
SOPs: new sop
Data files: Excell sheet template : concentrations of intra..., Treatments Test 1, Umlaut in sheet names from Excel, Umlaut only in cells, a_transcriptome from BII-S-1, test plot data
Snapshots: No snapshots
Submitter: Quyen Yamanaka
Biological problem addressed: Metabolism
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Organisms: Bacillus subtilis, Clostridium acetobutylicum, Bacillus subtilis : 168b (del ase / dasfadsf)
Models: Kinetic model for incubation
SOPs: Quyen's sop, Validation experiments, ^K blabla
Data files: 5mM GLC runout data., Quyen data
Snapshots: No snapshots
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: Glucose metabolism in Plasmodium falciparum tro..., Methods for interrelating 'omics data
Studies: Metabolomics data capture, Model validation
Assays: GLC incubation, GLC incubation
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: Glycerol Synthesis in Saccharomyces cerevisiae, Methods for interrelating 'omics data
Studies: Metabolomics data capture and 1 hidden item
Investigations: Growth control of the eukaryote cell: a systems..., Methods for interrelating 'omics data
Studies: Metabolomics data capture and 1 hidden item
Assays: GLC incubation, test assay
Excell sheet template : concentrations of intracellular metabolites
Creator: Olga Krebs
Submitter: Olga Krebs
Investigations: Glycolitic Flux in Lactococcus lactis, Growth control of the eukaryote cell: a systems..., Methods for interrelating 'omics data
Studies: Metabolomics data capture, The effects of Redox Charge on Glycolytic Flux, test study
Assays: Excel template for metabolomics data, test for biol problem and 1 hidden item
Results of transcriptional profile in saccharomyces cerevisiae under different experimental conditions
Creator: Katy Wolstencroft
Submitter: Katy Wolstencroft
Investigations: Growth control of the eukaryote cell: a systems..., Methods for interrelating 'omics data, inv1
Studies: Metabolomics data capture and 2 hidden items
Assays: Changes in flux on the transcriptome, Excel template for metabolomics data and 1 hidden item
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Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: Methods for interrelating 'omics data, inv1 and 1 hidden item
Studies: Metabolomics data capture, study1, test quyen study
Assays: Excel template for metabolomics data, Testing assay for project browser thingy and 1 hidden item
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: Glycolitic Flux in Lactococcus lactis, Methods for interrelating 'omics data
Studies: Metabolomics data capture, The effects of Redox Charge on Glycolytic Flux
Assays: Excel template for metabolomics data and 1 hidden item
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: Methods for interrelating 'omics data
Studies: Metabolomics data capture
Glycolytic model for Plasmodium falciparum; closed system
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: Glucose metabolism in Plasmodium falciparum tro..., Methods for interrelating 'omics data
Studies: Metabolomics data capture, Model validation
Assays: GLC incubation, GLC incubation
SOP for the determination of external metabolites (Glc, Pyr, Gly, Lac) in intact trophozoite incubations, and for the determination of intracellular metabolite concentrations.
Creators: Stuart Owen, Finn Bacall
Submitter: Stuart Owen
Creator: Lihua Angel
Submitter: queeny Nguyen
Investigations: Methods for interrelating 'omics data, inv1 and 1 hidden item
Studies: Metabolomics data capture and 2 hidden items
Assays: Excel template for metabolomics data, demo modelling analysis and 1 hidden item
edited to test subscription emails
Creators: None
Submitter: Quyen Yamanaka
Investigations: An example Investigation with Scale, Methods for interrelating 'omics data
Studies: Metabolomics data capture, a test study
Assays: Assay with a SOP, GLC incubation, Modelling Assay with a SOP
Creators: None
Submitter: Deleted submitter
Investigations: Methods for interrelating 'omics data
Studies: Metabolomics data capture
Assays: GLC incubation
Abstract (Expand)
Authors: C J Smyth, R Möllby, T Wadström
Date Published: 1st Nov 1975
Publication Type: Not specified
PubMed ID: 333
Citation: