SEEK ID: https://testing.sysmo-db.org/assays/50
Modelling analysis
Projects: SysMO DB
Investigation: Glucose metabolism in Plasmodium falciparum trophozoites
Study: Model validation
Assay position:
Biological problem addressed: Metabolism
Organisms: No organisms
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Creators and SubmitterViews: 1521
Created: 10th Jul 2015 at 14:20
Last updated: 26th Sep 2017 at 10:54
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Projects: SysMO DB, BaCell-SysMO, SulfoSys, SysMOLAB, <script>alert('xss-project-title')</script> & Test Project, Refinery NDD, Gatekeeper Testing Project, Hadas' project for Stuart, SilicoTryp, Gatekeeper test, Dummy project, Taverna Project, testing assigning organisms, Xiaoming Test, test, flora test project (2), api testing
Institutions: HITS gGmbH, DSM Nutritional Products Ltd., Manchester Centre for Integrative Systems Biology, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, School of Computer Science, University of Manchester, Universitat Autònoma de Barcelona, Helmholtz Centre for Infection Research, Department of Computer Science, ETH Zurich
https://orcid.org/0000-0003-2130-0865
Expertise: talking, walking, Data Management, Software Engineering, Software Architecture, Repositories, Microbiology, fishing, Proteomics
Tools: mouth, legs, Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, Microarray analysis, SBML
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The Senior Research Software Engineer on SysMO-DB team.
Developing and testing SysMO SEEK, WorkflowHub and RightField.
search test ... Thy‐1 restricts steatosis Böät squiggle
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The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
The investigation entails the construction and validation of a detailed mathematical model for glycolysis of the malaria parasite Plasmodium falciparum in the blood stage trophozoite form.
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
This study includes the experimental data for model validation and the model predictions of that data set.
Submitter: Stuart Owen
Investigation: Glucose metabolism in Plasmodium falciparum tro...
Assays: GLC incubation
Snapshots: No snapshots
Investigations: Glucose metabolism in Plasmodium falciparum tro..., Methods for interrelating 'omics data
Studies: Metabolomics data capture, Model validation
Assays: GLC incubation, GLC incubation
Glycolytic model for Plasmodium falciparum; closed system
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: Glucose metabolism in Plasmodium falciparum tro..., Methods for interrelating 'omics data
Studies: Metabolomics data capture, Model validation
Assays: GLC incubation, GLC incubation
SOP for the determination of external metabolites (Glc, Pyr, Gly, Lac) in intact trophozoite incubations, and for the determination of intracellular metabolite concentrations.
Creators: Stuart Owen, Finn Bacall
Submitter: Stuart Owen
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