The Senior Research Software Engineer on SysMO-DB team.
Developing and testing SysMO SEEK, WorkflowHub and RightField.
search test ... Thy‐1 restricts steatosis Böät
SEEK ID: https://testing.sysmo-db.org/people/134
Locations: Germany , Switzerland , United Kingdom , Saint Helena, Ascension and Tristan da Cunha , Spain
ORCID: https://orcid.org/0000-0003-2130-0865
Joined: 12th Dec 2008
Expertise: talking, walking, Data Management, Software Engineering, Software Architecture, Repositories, Microbiology, fishing, Proteomics
Tools: mouth, legs, Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, Microarray analysis, SBML
Related items
- Programmes (5)
- Projects (16)
- Institutions (8)
- Investigations (11+3)
- Studies (24+3)
- Assays (203+5)
- Strains (2)
- Data files (335+28)
- Models (23+6)
- SOPs (4+4)
- Publications (20)
- Presentations (7+8)
- Events (0+1)
- Documents (2+3)
- Sample types (4+6)
- Samples (10+3021)
- Workflows (0+1)
- Collections (1+2)
A very exciting programme
Projects: Taverna Project, Minimal project, fred, UNLOCK an open infrastructure for microbial communities, Comparative microbiome profiling of publically available database., Assay Stress Testing Project, mine
Web page: http://www.synbiochem.co.uk
A programme created for demonstration
Projects: flora test project (2), wefewqfweq4t4rtfr, testing project deletion, new project administer by?, My project 27
Web page: Not specified
Projects: Martin's test project, Aitor's Project, Test project 10 Feb. 2021, Mass Analysis of Plant Nutrition., Ulrikes Test Project, Ulrikes second test project, rafael test project, Overview of Plant Nutrition, Munazah test project, my datahub test project, Test, testproject, project about sharing policy, 1, Alan2 project, Vahid's project, Demo Miracum, whomingbird's test
Web page: Not specified
to complete
Projects: Olga's test project, project created by programme admin Olga, test
Web page: https://www.h-its.org/
alert('xss-project-description') & Test Project
Programme: This Project is not associated with a Programme
Public web page: Not specified
Organisms: Marmota
Programme: This Project is not associated with a Programme
Public web page: Not specified
Organisms: Bacillus subtilis
Comparative Systems Biology: Lactic Acid Bacteria
Programme: This Project is not associated with a Programme
Public web page: http://www.sysmo.net/index.php?index=57
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
Silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation
Programme: This Project is not associated with a Programme
Public web page: http://sulfosys.com/
Organisms: Sulfolobus solfataricus
Programme: myprog
Public web page: Not specified
Organisms: Not specified
Programme: This Project is not associated with a Programme
Public web page: Not specified
Organisms: Mus musculus, Homo sapiens
Programme: Olgas test programme
Public web page: Not specified
Organisms: Not specified
The transition from growing to non-growing Bacillus subtilis cells - A systems biology approach
Programme: This Project is not associated with a Programme
Public web page: http://www.sysmo.net/index.php?index=53
Organisms: Bacillus subtilis
A Taverna project
Programme: A maximal programme
Public web page: http://www.taverna.org.uk
Organisms: Escherichia coli, Felis catus, Marmota
Programme: This Project is not associated with a Programme
Public web page: Not specified
Organisms: Marmota
search test - Boat
Snapshots: No snapshots
Snapshots: Snapshot 1
- Olgas Investigation to test custom metadata
Snapshots: No snapshots
Snapshots: No snapshots
Snapshots: Snapshot 1, Snapshot 2
Submitter: Stuart Owen
Studies: ALS disease, Alzheimer disease, Parkinson disease
Assays: Transcriptomics
Snapshots: Snapshot 1
to try and reproduce snapshot view problem
Submitter: Stuart Owen
Studies: Public Study for OPSK-457
Assays: Assay for OPSK-457, Public Assay for OPSK-457, testing extraction title
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3, Snapshot 4, Snapshot 5
The investigation entails the construction and validation of a detailed mathematical model for glycolysis of the malaria parasite Plasmodium falciparum in the blood stage trophozoite form.
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
Submitter: Stuart Owen
Studies: a test study, fffff
Assays: Assay with a SOP, Assay with one strain, Modelling Assay with a SOP, Patient tests, jyggiihhiuhiuhiuh, test publish, testing assay and techno types, testing flux balance, testing href in description, testing making an assay
Snapshots: No snapshots
alert("xss-investigation-desc")
Submitter: Stuart Owen
Studies: Study XSS Check <script>alert("xss-study-title")</script>
Snapshots: No snapshots
Submitter: Stuart Owen
Assays: Test Assay for Publishing, Testing assay for project browser thingy, demo modelling analysis, ttt
Snapshots: No snapshots
update
Submitter: Stuart Owen
Investigation: Investigation with some private bits
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
Pharmacokinetics data set for caffeine
Submitter: Stuart Owen
Investigation: 1 hidden item
Assays: Digitized pharmacokinetics data (Akinyinka2000), Digitized pharmacokinetics data (Amchin1999), Digitized pharmacokinetics data (Blanchard1983a), Digitized pharmacokinetics data (Haller2002), Digitized pharmacokinetics data (Healy1991), Digitized pharmacokinetics data (Hetzler1990), Digitized pharmacokinetics data (Jeppesen1996), Digitized pharmacokinetics data (Kakuda2014), Digitized pharmacokinetics data (Kaplan1997), Digitized pharmacokinetics data (Magnusson2008), Digitized pharmacokinetics data (Oh2012), Digitized pharmacokinetics data (Perera2011), Digitized pharmacokinetics data (Spigset1999a), Digitized pharmacokinetics data (Tanaka2014)
Snapshots: No snapshots
This study involves all data gathered from the Kollevåg study - studying environmental pollution at a capped waste disposal site in Kollevåg, Askøy.
Cod were caged in Kollevåg (Stations 1, 2 and 3 - from inner to outer parts) and at a reference location (Ref station) for a period of six weeks, from 2nd September 2016, to 17-18th October 2016.
Snapshots: No snapshots
Snapshots: No snapshots
Snapshots: No snapshots
Snapshots: No snapshots
This study includes the experimental data for model validation and the model predictions of that data set.
Submitter: Stuart Owen
Investigation: Glucose metabolism in Plasmodium falciparum tro...
Assays: GLC incubation
Snapshots: No snapshots
Snapshots: No snapshots
ttt
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: inv1
Study: 1 hidden item
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Glycerol Synthesis in Saccharomyces cerevisiae
Study: Glycerol Synthesis Pathway
Organisms: Clostridium acetobutylicum : ATCC824 (wild-type / wild-type)
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: inv1
Study: study1
Organisms: No organisms
SOPs: COGEME_extraction_mod-chemostat_v1
Data files: Glycerol Synthesis dummy validation data, dummy datafile, test plot data
Snapshots: No snapshots
Submitter: Stuart Owen
Biological problem addressed: Model Analysis Type
Investigation: inv1
Study: 1 hidden item
Organisms: No organisms
Models: Model with picture added twice (as a file and a..., Potato
SOPs: new sop
Data files: a_metabolome_BII-S-1, a_microarray from BII-S-2
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: Quyen's sop
Data files: SysMO template, a_microarray from BII-S-2, dummy 2 and 1 hidden item
Snapshots: No snapshots
Submitter: Stuart Owen
Biological problem addressed: Model Analysis Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
Models: Lin3, Potato and 1 hidden item
SOPs: Quyen's sop
Data files: No Data files
Snapshots: No snapshots
alert("xss-assay-desc")
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Inv XSS Check <script>alert("xss-investigation-...
Organisms: No organisms
SOPs: No SOPs
Data files: Data File XSS check <script>alert("xss-in-df-ti..., DataFile A and 1 hidden item
Snapshots: No snapshots
edited to test subscription emails
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: inv1
Study: study1
Organisms: No organisms
SOPs: No SOPs
Data files: Animals, Backwards and mixed plot data, Viewable
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Protein-Protein Interaction Profiling
Technology type: Affinity Chromatography
Investigation: An example Investigation with Scale
Study: a test study
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: Bacillus subtilis : NCIB3610 (wild-type / wild-type)
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Flux Balance Analysis
Technology type: 2-hybrid System
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Biological problem addressed: Metabolism
Investigation: Glucose metabolism in Plasmodium falciparum tro...
Study: Model validation
Organisms: No organisms
Models: Kinetic model for incubation
SOPs: Validation experiments
Data files: 5mM GLC runout data.
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Investigation with some private bits
Study: 1 hidden item
Submitter: Stuart Owen
Assay type: SNP Detection
Technology type: Binding
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Gene Expression Profiling
Technology type: Microarray
Investigation: Neuro degenerative disease
Study: Alzheimer disease
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Transcriptomics
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Data digitized from publication.
AUTHOR_DESCRIPTION
Organisms: Escherichia coli DH5[alpha]
SOPs: No SOPs
Data files: CSV (Spigset1999a), PNG (Spigset1999a)
Snapshots: No snapshots
Data digitized from publication.
AUTHOR_DESCRIPTION
Organisms: Escherichia coli DH5[alpha]
SOPs: No SOPs
Data files: CSV (Amchin1999), PNG (Amchin1999)
Snapshots: No snapshots
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Submitter: Stuart Owen
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Escherichia coli
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
link to google doc
Creators: Stuart Owen, baby boy, what is this?????????????
Submitter: Olga Krebs
Creators: None
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
banana carrot - testing markdown indexing
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Digitized pharmacokinetics data.
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: 1 hidden item
Studies: PKDB Caffeine Study
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
BACKGROUND: The behaviour of biological systems can be deduced from their mathematical models. However, multiple sources of data in diverse forms are required in the construction of a model in order to define its components and their biochemical reactions, and corresponding parameters. Automating the assembly and use of systems biology models is dependent upon data integration processes involving the interoperation of data and analytical resources. RESULTS: Taverna workflows have been developed ...
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: JWS Online
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Glycolytic model for Plasmodium falciparum; closed system
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: Glucose metabolism in Plasmodium falciparum tro..., Methods for interrelating 'omics data
Studies: Metabolomics data capture, Model validation
Assays: GLC incubation, GLC incubation
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
re-testing model picture after changes.
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Ordinary differential equations (ODE)
Model format: Mathematica
Environment: Copasi
Organism: Enterococcus faecalis
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: Glycolitic Flux in Lactococcus lactis
Studies: 1 hidden item
Assays: example assay
Potato model taken from JWS Online: http://jjj.mib.ac.uk/
Testing notification email
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: JWS Online
Organism: Not specified
Investigations: An example Investigation with Scale, inv1
Studies: a test study and 1 hidden item
Model for testing
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Partial differential equations (PDE)
Model format: SBML
Environment: Not specified
Organism: Callimico goeldii
Investigations: test investigation
Studies: 1 hidden item
Assays: 1 hidden item
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Model from JWS Online
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
alert("xss-in-model-desc");
Creators: None
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
The animal cell cycle is controlled by the periodic variation of two cyclin-dependent protein kinases, cdk1 and cdk2, which govern the entry into the M (mitosis) and S (DNA replication) phases, respectively. The ordered progression between these phases is achieved thanks to the existence of checkpoint mechanisms based on mutual inhibition of these processes. Here we study a simple theoretical model for oscillations in cdk1 and cdk2 activity, involving mutual inhibition of the two oscillators. ...
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Genomic data allow the large-scale manual or semi-automated assembly of metabolic network reconstructions, which provide highly curated organism-specific knowledge bases. Although several genome-scale network reconstructions describe Saccharomyces cerevisiae metabolism, they differ in scope and content, and use different terminologies to describe the same chemical entities. This makes comparisons between them difficult and underscores the desirability of a consolidated metabolic network that ...
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: Not specified
Organism: Not specified
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
UI allows multiple creators, but do they all get added?
Creators: Stuart Owen, Finn Bacall, Finn Bacall, Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
SOP for the determination of external metabolites (Glc, Pyr, Gly, Lac) in intact trophozoite incubations, and for the determination of intracellular metabolite concentrations.
Creators: Stuart Owen, Finn Bacall
Submitter: Stuart Owen
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Creators: Stuart Owen, Creator <script>alert("xss-sop-creator");</script>
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Abstract
Editor:
Date Published: 1st Sep 2017
Publication Type: Journal
DOI: 10.1111/ejn.13472
Citation: Eur J Neurosci 46(5)
Abstract
Authors: Smijin Soman, Marcus Keatinge, Mahsa Moein, Marc Da Costa, Heather Mortiboys, Alexander Skupin, Sreedevi Sugunan, Michal Bazala, Jacek Kuznicki, Oliver Bandmann
Date Published: 24th Nov 2016
Publication Type: Journal
DOI: 10.1111/ejn.13473
Citation: Eur J Neurosci 45(4):528-535
Abstract
Authors: Dagmar Waltemath, Jonathan R Karr, Frank T Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K Aranganathan, Kambiz Baghalian, Arne T Bittig, Paulo E Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S Costa, Joseph Cursons, Tobias Czauderna, Arthur P Goldberg, Harold F Gomez, Jens Hahn, Tuure Hameri, Daniel F Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knupfer, Matthias Konig, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Toure, Jannis Uhlendorf, Thawfeek M Varusai, Leandro H Watanabe, Florian Wendland, Markus Wolfien, James T Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber
Date Published: 24th Sep 2016
Publication Type: Not specified
Abstract
Authors: Gerald Penkler, Francois du Toit, Waldo Adams, Marina Rautenbach, Daniel C. Palm, David D. van Niekerk, Jacky L. Snoep
Date Published: 1st Apr 2015
Publication Type: Not specified
DOI: 10.1111/febs.13237
Citation: FEBS J 282(8) : 1481
Abstract
Authors: Minsuk Kim, Jeong Sang Yi, Joonwon Kim, Ji-Nu Kim, Min Woo Kim, Byung-Gee Kim
Date Published: 1st Sep 2014
Publication Type: Not specified
Citation: Biotechnology Journal 9(9) : 1185
Abstract (Expand)
Authors: N. Scichilone, F. Braido, S. Taormina, E. Pozzecco, A. Paterno, I. Baiardini, V. Casolaro, G. W. Canonica, V. Bellia
Date Published: 31st Aug 2013
Publication Type: Not specified
PubMed ID: 24073408
Citation:
Abstract (Expand)
Authors: Jayesh Sanmukhani, Vimal Satodia, Jaladhi Trivedi, Tejas Patel, Deepak Tiwari, Bharat Panchal, Ajay Goel, Chandra Bhanu Tripathi
Date Published: 9th Jul 2013
Publication Type: Not specified
PubMed ID: 23832433
Citation:
Abstract
Authors: K. Wolstencroft, R. Haines, D. Fellows, A. Williams, D. Withers, S. Owen, S. Soiland-Reyes, I. Dunlop, A. Nenadic, P. Fisher, J. Bhagat, K. Belhajjame, F. Bacall, A. Hardisty, A. Nieva de la Hidalga, M. P. Balcazar Vargas, S. Sufi, C. Goble
Date Published: 2nd May 2013
Publication Type: Not specified
DOI: 10.1093/nar/gkt328
Citation:
Abstract (Expand)
Authors: Andreas Petzold, Kathrin Reichwald, Marco Groth, Stefan Taudien, Nils Hartmann, Steffen Priebe, Dmitry Shagin, Christoph Englert, Matthias Platzer
Date Published: 16th Mar 2013
Publication Type: Not specified
PubMed ID: 23496936
Citation:
Abstract
Authors: Firstname Lastname, Firstname Lastname, Matthew Horridge, Simon Jupp, Firstname Lastname, Firstname Lastname, Firstname Lastname, Wolfgang Mueller, Robert Stevens, Firstname Lastname
Date Published: 1st Feb 2013
Publication Type: Not specified
DOI: 10.1002/cpe.2941
Citation:
Abstract
Editor:
Date Published: 2013
Publication Type: Not specified
DOI: 10.1007/978-3-642-41338-4_14
Citation:
Abstract
Authors: Katherine Wolstencroft, Stuart Owen, Olga Krebs, Wolfgang Mueller, Quyen Nguyen, Jacky L. Snoep, Carole Goble
Date Published: 2013
Publication Type: Not specified
DOI: 10.1007/978-3-642-41338-4_14
Citation: Lecture Notes in Computer Science 8219 : 212
Abstract
Authors: Martin Golebiewski, Martin Golebiewski
Date Published: 7th Oct 2011
Publication Type: Not specified
Citation:
Abstract (Expand)
Authors: C J Smyth, R Möllby, T Wadström
Date Published: 1st Nov 1975
Publication Type: Not specified
PubMed ID: 333
Citation:
Abstract
Authors: R J Smith, R G Bryant
Date Published: 27th Oct 1975
Publication Type: Not specified
PubMed ID: 3
Citation:
Abstract
Authors: K. S. Bose, R. H. Sarma
Date Published: 27th Oct 1975
Publication Type: Not specified
PubMed ID: 2
Citation: Biochem Biophys Res Commun. 1975 Oct 27;66(4):1173-9.
Abstract
Author: I N Golovistikov
Date Published: 11th Aug 1975
Publication Type: Not specified
PubMed ID: 222
Citation:
Abstract
Authors: I. V. Berezin, B. M. Kershengol'ts, N. N. Ugarova
Date Published: 11th Aug 1975
Publication Type: Not specified
PubMed ID: 223
Citation: Dokl Akad Nauk SSSR. 1975 Aug 11;223(5):1256-9.
Abstract
Authors: Y Yokoyama, T Kono, M Aoki
Date Published: 10th Jun 1975
Publication Type: Not specified
PubMed ID: 444
Citation:
Abstract
Authors: A B Makar, K E McMartin, M Palese, T R Tephly
Date Published: 1st Jun 1975
Publication Type: Not specified
PubMed ID: 1
Citation:
Testing as a full link, like: http://www.slideshare.net/FAIRDOM/making-your-data-good-enough-for-sharing?qid=e33b73c1-694b-4ada-9808-1b75e60fde62&v=qf1&b=&from_search=1
Creator: Stuart Owen
Submitter: Stuart Owen
Using Transparent Background (Square Version, SVG) from https://fair-dom.org/mediakit
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Olgas test collection
Maintainers: Olga Krebs, Ulrike Wittig, Stuart Owen, OlgaII KrebsII
Number of items: 4
Tags: Not specified