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Created: 25th Aug 2011 at 16:33
Last updated: 5th Apr 2013 at 08:58
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Version 1 (earliest) Created 25th Aug 2011 at 16:33 by Stuart Owen
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Projects: SysMO DB, BaCell-SysMO, SulfoSys, SysMOLAB, <script>alert('xss-project-title')</script> & Test Project, Refinery NDD, Gatekeeper Testing Project, Hadas' project for Stuart, SilicoTryp, Gatekeeper test, Dummy project, Taverna Project, testing assigning organisms, Xiaoming Test, test, flora test project (2)
Institutions: HITS gGmbH, DSM Nutritional Products Ltd., Manchester Centre for Integrative Systems Biology, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, School of Computer Science, University of Manchester, Autonomous University of Barcelona, Helmholtz Centre for Infection Research Braunscheig, ETH Zurich
https://orcid.org/0000-0003-2130-0865Expertise: talking, walking, Data Management, Software Engineering, Software Architecture, Repositories, Microbiology, fishing, Proteomics
Tools: mouth, legs, Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, Microarray analysis, SBML
The Senior Research Software Engineer on SysMO-DB team.
Developing and testing SysMO SEEK, WorkflowHub and RightField.
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
Submitter: Stuart Owen
Assays: Test Assay for Publishing, Testing assay for project browser thingy, demo modelling analysis, ttt
Snapshots: No snapshots
This Investigation was performed by SySMO DB team together with PALS in order to crete methods and best practices for capturing experimental data.
Submitter: Olga Krebs
Studies: Metabolomics data capture
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
ttt
Snapshots: No snapshots
Submitter: Stuart Owen
Investigation: inv1
Assays: Test Assay for Publishing, Testing assay for project browser thingy
Snapshots: No snapshots
Submitter: Olga Krebs
Investigation: Methods for interrelating 'omics data
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
Dear SEEK users, this Assay is just an example Excell sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat
.
Submitter: Olga Krebs
Assay type: Amplification
Technology type: Mass Spectrometry
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Organisms: Callimico goeldii
SOPs: new sop
Data files: Excell sheet template : concentrations of intra..., Treatments Test 1, Umlaut in sheet names from Excel, Umlaut only in cells, a_transcriptome from BII-S-1, test plot data
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: inv1
Study: study1
Organisms: No organisms
SOPs: COGEME_extraction_mod-chemostat_v1
Data files: Glycerol Synthesis dummy validation data, dummy datafile, test plot data
Snapshots: No snapshots