SEEK ID: https://testing.sysmo-db.org/people/136
Location: Germany
ORCID: Not specified
Joined: 12th Feb 2009
Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics
Tools: Databases, data modeling, ontology
Related items
- Programmes (2)
- Projects (4)
- Institutions (1)
- Investigations (2+2)
- Studies (1+1)
- Assays (2+1)
- Strains (2)
- Data files (5+1)
- Models (0+1)
- SOPs (3)
- Publications (3)
- Presentations (1)
- Documents (0+1)
- Sample types (1+2)
- Samples (1+3)
- Collections (1+1)
to complete
Projects: Olga's test project, project created by programme admin Olga, test
Web page: https://www.h-its.org/
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
Olga's test project for OlgaII
Programme: Olgas test programme
Public web page: Not specified
Start date: 7th Dec 2020
End date: 27th Nov 2021
Organisms: Not specified
project created by programme admin Olga
Programme: Olgas test programme
Public web page: Not specified
Start date: 1st Mar 2021
End date: 1st Apr 2021
Organisms: Enterococcus faecalis
- Olgas Investigation to test custom metadata
Snapshots: No snapshots
This Investigation was performed by SySMO DB team together with PALS in order to crete methods and best practices for capturing experimental data.
Submitter: Olga Krebs
Studies: Metabolomics data capture
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
Submitter: Olga Krebs
Investigation: Methods for interrelating 'omics data
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
Dear SEEK users, this Assay is just an example Excell sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat
.
Submitter: Olga Krebs
Assay type: Amplification
Technology type: Mass Spectrometry
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Organisms: Callimico goeldii
SOPs: new sop
Data files: Excell sheet template : concentrations of intra..., Treatments Test 1, Umlaut in sheet names from Excel, Umlaut only in cells, a_transcriptome from BII-S-1, test plot data
Snapshots: No snapshots
test for biol problem
Submitter: Olga Krebs
Biological problem addressed: Gene Regulatory Network
Investigation: Growth control of the eukaryote cell: a systems...
Study: test study
Organisms: Bacillus subtilis : ATCC6633 (wild-type / wild-type)
Models: No Models
SOPs: No SOPs
Data files: Excell sheet template : concentrations of intra...
Snapshots: No snapshots
Submitter: Olga Krebs
Provider Name: Not specified
Provider's strain ID: some id
Organism: Bacillus subtilis
Genotypes: del ase
Phenotypes: wild-type
Comment: ss
Genotypes: ins ftrg
Phenotypes: wild-type
Comment: Not specified
test presentation olga
Creators: None
Submitter: Olga Krebs
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
link to google doc
Creators: Stuart Owen, baby boy, what is this?????????????
Submitter: Olga Krebs
Excell sheet template : concentrations of intracellular metabolites
Creator: Olga Krebs
Submitter: Olga Krebs
Investigations: Glycolitic Flux in Lactococcus lactis, Growth control of the eukaryote cell: a systems..., Methods for interrelating 'omics data
Studies: Metabolomics data capture, The effects of Redox Charge on Glycolytic Flux, test study
Assays: Excel template for metabolomics data, test for biol problem and 1 hidden item
test for publishing
Creators: Olga Krebs, Quyen Yamanaka
Submitter: Olga Krebs
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
test
Creator: Olga Krebs
Submitter: Olga Krebs
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Written Standard Operating Procedures provide workers with the operational information necessary to perform a job properly and ensure consistency in the operations. Standard Operating Procedures provide a historical record of steps in the how, why and when and serve as a training tool for teaching users.
Creator: Olga Krebs
Submitter: Olga Krebs
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
The procedure describes the preparation of fluorescent DNA probes from human mRNA or total RNA.
Creator: Olga Krebs
Submitter: Olga Krebs
Investigations: No Investigations
Studies: No Studies
Assays: No Assays
Creator: Olga Krebs
Submitter: Olga Krebs
Abstract
Authors: Firstname Lastname, Firstname Lastname, Matthew Horridge, Simon Jupp, Firstname Lastname, Firstname Lastname, Firstname Lastname, Wolfgang Mueller, Robert Stevens, Firstname Lastname
Date Published: 1st Feb 2013
Publication Type: Not specified
DOI: 10.1002/cpe.2941
Citation:
Abstract
Authors: Katherine Wolstencroft, Stuart Owen, Olga Krebs, Wolfgang Mueller, Quyen Nguyen, Jacky L. Snoep, Carole Goble
Date Published: 2013
Publication Type: Not specified
DOI: 10.1007/978-3-642-41338-4_14
Citation: Lecture Notes in Computer Science 8219 : 212
Abstract (Expand)
Authors: Firstname Lastname, Martin Golebiewski, Renate Kania, Firstname Lastname, Saqib Mir, Andreas Weidemann, Ulrike Wittig
Date Published: 14th Sep 2007
Publication Type: Not specified
PubMed ID: 17822389
Citation:
David's presentation from PALs meeting in Heidelberg
Creators: Olga Krebs, David Jones, Quyen Yamanaka, Miss X
Submitter: Olga Krebs
to test new fearures in SEEK version 1.12.0 this sampletype for Cell Culture description
sample_ID (String) *, Lab sample ID (String) *, parent sample (Registered Sample - OlgasTestType) , Age at sampling (Integer) ( wk ) , Starting date (Date time) *, Gender (Controlled Vocabulary - Gender) *, SOP used for culturing (Web link)
Type: Testing_new_features_sampletypeCellCulture
Creators: Olga Krebs, Xiaoming Hu, Nature Inself, ghost
Submitter: Olga Krebs
Olgas test collection
Maintainers: Olga Krebs, Ulrike Wittig, Stuart Owen, OlgaII KrebsII
Number of items: 4
Tags: Not specified