Excell sheet template : concentrations of intracellular metabolites
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Created: 10th Jun 2009 at 17:35
Last updated: 26th Jun 2015 at 10:27
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Version 1 (earliest) Created 16th Oct 2009 at 10:57 by Olga Krebs
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Related items
Projects: SysMO DB, Xiaoming Test, Olga's test project, project created by programme admin Olga
Institutions: HITS gGmbH
Expertise: Genetics, Molecular Biology, Bioinformatics, Data Management, Transcriptomics
Tools: Databases, data modeling, ontology
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
This Investigation was performed by SySMO DB team together with PALS in order to crete methods and best practices for capturing experimental data.
Submitter: Olga Krebs
Studies: Metabolomics data capture
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
Cell growth underlies many key cellular and developmental processes, yet a limited number of studies have been carried out on cell-growth regulation. Comprehensive studies at the transcriptional, proteomic and metabolic levels under defined controlled conditions are currently lacking.
This investigation shows public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1) Organism: Saccharomyces Cerevisiae
Submitter: Katy Wolstencroft
Studies: A time course analysis of transcription response in yeast treated with ..., Can yeast glycolysis be understood in terms of in vitro kinetics of the ..., test study
Assays: Changes in flux on the metabolome, Changes in flux on the proteome, Changes in flux on the transcriptome, Glycolysis in Saccharomyces cerevisiae, Time course analysis of transcription, Transcriptional profiling, new assay from data file, test assay, test for biol problem
Snapshots: No snapshots
An investigation into the control mechanisms of glycolytic flux in Lactococcus lactis.
This investigation represents the data and models published by Hoefnagel et al in JWS Online and in M.H.N. Hoefnagel, J. Hugenholtz and J.L. SnoepMol. Biol. Reports 29, 157-161 (2002)
Submitter: Jacky Snoep
Studies: The effects of Redox Charge on Glycolytic Flux
Assays: Time dependent responses of glycolytic intermediates in a detailed glyco..., example assay
Snapshots: No snapshots
Submitter: Quyen Yamanaka
Investigation: Growth control of the eukaryote cell: a systems...
Assays: test for biol problem
Snapshots: No snapshots
Submitter: Olga Krebs
Investigation: Methods for interrelating 'omics data
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
A study which combines mathematical modelling and experimental measurements to determine the effects of redox charge on glycolytic flux
Submitter: Jacky Snoep
Investigation: Glycolitic Flux in Lactococcus lactis
Assays: Time dependent responses of glycolytic intermediates in a detailed glyco...
Snapshots: No snapshots
Dear SEEK users, this Assay is just an example Excell sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat
.
Submitter: Olga Krebs
Assay type: Amplification
Technology type: Mass Spectrometry
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Organisms: Callimico goeldii
SOPs: new sop
Data files: Excell sheet template : concentrations of intra..., Treatments Test 1, Umlaut in sheet names from Excel, Umlaut only in cells, a_transcriptome from BII-S-1, test plot data
Snapshots: No snapshots
test for biol problem
Submitter: Olga Krebs
Biological problem addressed: Gene Regulatory Network
Investigation: Growth control of the eukaryote cell: a systems...
Study: test study
Organisms: Bacillus subtilis : ATCC6633 (wild-type / wild-type)
Models: No Models
SOPs: No SOPs
Data files: Excell sheet template : concentrations of intra...
Snapshots: No snapshots
Olgas test collection
Maintainers: Olga Krebs, Ulrike Wittig, Stuart Owen, OlgaII KrebsII
Number of items: 4
Tags: Not specified