Detailed glycolytic model in Lactococcus lactis
SEEK ID: https://testing.sysmo-db.org/assays/10
Modelling analysis
Projects: SysMO DB
Investigation: Glycolitic Flux in Lactococcus lactis
Study: The effects of Redox Charge on Glycolytic Flux
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Biological problem addressed: Metabolic Network
Organisms: Lactococcus lactis
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Created: 8th Aug 2011 at 14:03
Last updated: 26th Sep 2017 at 10:54
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Projects: SysMO DB, Virtual Liver Network Developers
Institutions: School of Computer Science, University of Manchester, HITS gGmbH
Expertise: Biochemistry, Bioinformatics, Data Management
Tools: Data Management, Transcriptomics, Databases, Workflows, Web services, Taverna, Ontologies
I am a Research Fellow at the University of Manchester, working in Bioinformatics and Computer Science. I am also a guest researcher at the Vrije Universiteit.My research interests include scientific workflows, semantic discovery, and applying ontology technologies to biological data
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
An investigation into the control mechanisms of glycolytic flux in Lactococcus lactis.
This investigation represents the data and models published by Hoefnagel et al in JWS Online and in M.H.N. Hoefnagel, J. Hugenholtz and J.L. SnoepMol. Biol. Reports 29, 157-161 (2002)
Submitter: Jacky Snoep
Studies: The effects of Redox Charge on Glycolytic Flux
Assays: Time dependent responses of glycolytic intermediates in a detailed glyco..., example assay
Snapshots: No snapshots
A study which combines mathematical modelling and experimental measurements to determine the effects of redox charge on glycolytic flux
Submitter: Jacky Snoep
Investigation: Glycolitic Flux in Lactococcus lactis
Assays: Time dependent responses of glycolytic intermediates in a detailed glyco...
Snapshots: No snapshots
Investigations: Glycolitic Flux in Lactococcus lactis
Detailed kinetic model for glycolysis of L. lactis. The model is basically the same model as that published by Hoefnagel et al 2002 (Mol. Biol. Reports 29, 157-161). The change made to the model is to make external glucose a variable such that a glucose pulse can be simulated.
Creators: Jacky Snoep, Ana Rute Neves
Submitter: Katy Wolstencroft
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: Not specified
Organism: Lactococcus lactis
Investigations: Glycolitic Flux in Lactococcus lactis, inv1
Studies: The effects of Redox Charge on Glycolytic Flux and 1 hidden item
Assays: Time dependent responses of glycolytic intermed... and 1 hidden item
Abstract (Expand)
Authors: Ana Rute Neves, Rita Ventura, Nahla Mansour, Claire Shearman, Michael J Gasson, Christopher Maycock, Ana Ramos, Helena Santos
Date Published: 13th May 2002
Publication Type: Not specified
PubMed ID: 12011086
Citation: