Lactococcus lactis glycolysis Version 4
Simulate Model on Copasi
Simulate Model on JWSDetailed kinetic model for glycolysis of L. lactis. The model is basically the same model as that published by Hoefnagel et al 2002 (Mol. Biol. Reports 29, 157-161). The change made to the model is to make external glucose a variable such that a glucose pulse can be simulated.
SEEK ID: https://testing.sysmo-db.org/models/19?version=4
1 item is associated with this Model:-
hoefnagel3.xml (SBML and XML document - 66.9 KB)
Organism: Lactococcus lactis
Model type: Ordinary differential equations (ODE)
Model format: SBML
Execution or visualisation environment: Not specified
Model image: No image specified
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Creators and Submitter
Views: 1349 Downloads: 56 Runs: 0
Created: 19th Aug 2011 at 08:53
Last updated: 19th Aug 2011 at 08:59
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Version History
Version 4 (latest) Created 19th Aug 2011 at 08:53 by Katy Wolstencroft
Addedd metabolite annotations
Related items
Projects: PSYSMO, MOSES, SysMOLAB, SulfoSys, SysMO DB
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester, University of Stellenbosch, HITS gGmbH
Projects: SysMO DB, Virtual Liver Network Developers
Institutions: School of Computer Science, University of Manchester, HITS gGmbH
I am a Research Fellow at the University of Manchester, working in Bioinformatics and Computer Science. I am also a guest researcher at the Vrije Universiteit.My research interests include scientific workflows, semantic discovery, and applying ontology technologies to biological data
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Submitter: Stuart Owen
Assays: Test Assay for Publishing, Testing assay for project browser thingy, demo modelling analysis, ttt
An investigation into the control mechanisms of glycolytic flux in Lactococcus lactis.
This investigation represents the data and models published by Hoefnagel et al in JWS Online and in M.H.N. Hoefnagel, J. Hugenholtz and J.L. SnoepMol. Biol. Reports 29, 157-161 (2002)
A study which combines mathematical modelling and experimental measurements to determine the effects of redox charge on glycolytic flux
Submitter: Jacky Snoep
Investigation: Glycolitic Flux in Lactococcus lactis
Assays: Time dependent responses of glycolytic intermediates in a detailed glyco...
Detailed glycolytic model in Lactococcus lactis
Submitter: Katy Wolstencroft
Biological problem addressed: Metabolic Network
Investigation: Glycolitic Flux in Lactococcus lactis
Abstract (Expand)
Authors: Ana Rute Neves, Rita Ventura, Nahla Mansour, Claire Shearman, Michael J Gasson, Christopher Maycock, Ana Ramos, Helena Santos
Date Published: 13th May 2002
Publication Type: Not specified
