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SEEK ID: https://testing.sysmo-db.org/studies/14
An example Investigation with Scale
Projects: SysMO DB
Study position:
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Created: 30th Aug 2011 at 15:06
Last updated: 5th Apr 2013 at 09:02
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- People (1)
- Programmes (1)
- Projects (1)
- Investigations (1)
- Assays (10+3)
- Data files (5+1)
- Models (2+1)
- SOPs (1)
- Publications (1)
- Samples (3)
Projects: SysMO DB, BaCell-SysMO, SulfoSys, SysMOLAB, <script>alert('xss-project-title')</script> & Test Project, Refinery NDD, Gatekeeper Testing Project, Hadas' project for Stuart, SilicoTryp, Gatekeeper test, Dummy project, Taverna Project, testing assigning organisms, Xiaoming Test, test, flora test project (2)
Institutions: HITS gGmbH, DSM Nutritional Products Ltd., Manchester Centre for Integrative Systems Biology, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, School of Computer Science, University of Manchester, Autonomous University of Barcelona, Helmholtz Centre for Infection Research Braunscheig, ETH Zurich
https://orcid.org/0000-0003-2130-0865Expertise: talking, walking, Data Management, Software Engineering, Software Architecture, Repositories, Microbiology, fishing, Proteomics
Tools: mouth, legs, Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, Microarray analysis, SBML
The Senior Research Software Engineer on SysMO-DB team.
Developing and testing SysMO SEEK, WorkflowHub and RightField.
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
Submitter: Stuart Owen
Studies: a test study, fffff
Assays: Assay with a SOP, Assay with one strain, Modelling Assay with a SOP, Patient tests, jyggiihhiuhiuhiuh, test publish, testing assay and techno types, testing flux balance, testing href in description, testing making an assay
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: Quyen's sop
Data files: SysMO template, a_microarray from BII-S-2, dummy 2 and 1 hidden item
Snapshots: No snapshots
Submitter: Stuart Owen
Biological problem addressed: Model Analysis Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
Models: Lin3, Potato and 1 hidden item
SOPs: Quyen's sop
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Protein-Protein Interaction Profiling
Technology type: Affinity Chromatography
Investigation: An example Investigation with Scale
Study: a test study
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: Bacillus subtilis : NCIB3610 (wild-type / wild-type)
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Flux Balance Analysis
Technology type: 2-hybrid System
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: SNP Detection
Technology type: Binding
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Transcriptomics
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Creator: Stuart Owen
Submitter: Stuart Owen
Investigations: An example Investigation with Scale
Studies: a test study
Assays: testing assay and techno types
Results of transcriptional profile in Saccharomyces cerevisiae after rapamycin treatment
Creator: Katy Wolstencroft
Submitter: Katy Wolstencroft
Investigations: An example Investigation with Scale, Growth control of the eukaryote cell: a systems..., inv1
Studies: A time course analysis of transcription respon..., a test study and 1 hidden item
Assays: Assay with a SOP, Time course analysis of transcription, demo modelling analysis
Creators: Quyen Yamanaka, testcreator
Submitter: Quyen Yamanaka
Creator: Quyen Yamanaka
Submitter: Quyen Yamanaka
Potato model taken from JWS Online: http://jjj.mib.ac.uk/
Testing notification email
Creator: Stuart Owen
Submitter: Stuart Owen
Model type: Not specified
Model format: SBML
Environment: JWS Online
Organism: Not specified
Investigations: An example Investigation with Scale, inv1
Studies: a test study and 1 hidden item
Creator: Franco Boudrot
Submitter: Franco Boudrot
Model type: Not specified
Model format: Not specified
Environment: Not specified
Organism: Not specified
Investigations: An example Investigation with Scale, Glycolitic Flux in Lactococcus lactis
Studies: a test study and 1 hidden item
Assays: Modelling Assay with a SOP, example assay
edited to test subscription emails
Creators: None
Submitter: Quyen Yamanaka
Investigations: An example Investigation with Scale, Methods for interrelating 'omics data
Studies: Metabolomics data capture, a test study
Assays: Assay with a SOP, GLC incubation, Modelling Assay with a SOP
Abstract (Expand)
Authors: Andreas Petzold, Kathrin Reichwald, Marco Groth, Stefan Taudien, Nils Hartmann, Steffen Priebe, Dmitry Shagin, Christoph Englert, Matthias Platzer
Date Published: 16th Mar 2013
Publication Type: Not specified
PubMed ID: 23496936
Citation: