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SEEK ID: https://testing.sysmo-db.org/studies/14

Investigation: An example Investigation with Scale

Projects: SysMO DB

Study position:

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Creators and Submitter

Creators

Not specified

Submitter

Stuart Owen

Activity

Views: 1412

Created: 30th Aug 2011 at 15:06

Last updated: 5th Apr 2013 at 09:02

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People (1)
Programmes (1)
Projects (1)
Investigations (1)
Assays (9+3)
Data files (5+1)
Models (2+1)
SOPs (1)
Publications (1)

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Stuart Owen

Projects: SysMO DB, BaCell-SysMO, SulfoSys, SysMOLAB, <script>alert('xss-project-title')</script> & Test Project, Refinery NDD, Gatekeeper Testing Project, Hadas' project for Stuart, SilicoTryp, Gatekeeper test, Dummy project, Taverna Project, testing assigning organisms, Xiaoming Test, test, flora test project (2)

Institutions: HITS gGmbH, DSM Nutritional Products Ltd., Manchester Centre for Integrative Systems Biology, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, School of Computer Science, University of Manchester, Autonomous University of Barcelona, Helmholtz Centre for Infection Research Braunscheig, ETH Zurich

https://orcid.org/0000-0003-2130-0865

Expertise: talking, walking, Data Management, Software Engineering, Software Architecture, Repositories, Microbiology, fishing, Proteomics

Tools: mouth, legs, Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, Microarray analysis, SBML

The Senior Research Software Engineer on SysMO-DB team.

Developing and testing SysMO SEEK, WorkflowHub and RightField.

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Dummy programme

No description specified

Projects: SysMO DB

Web page: Not specified

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SysMO DB

The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:

maximises the ‘shelf life’ and utility of data generated by SysMO;
provides an integrated platform for the dissemination ...

Programme: Dummy programme

Public web page: http://www.sysmo-db.org/

Organisms: Lactic Acid Bacteria, Agapornis

Advanced Investigations list for this Study with search and filtering

An example Investigation with Scale

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Studies: a test study, fffff

Assays: Assay with a SOP, Assay with one strain, Modelling Assay with a SOP, Patient tests, jyggiihhiuhiuhiuh, testing assay and techno types, testing flux balance, testing href in description, testing making an assay

Snapshots: No snapshots

Created: 26th Aug 2011 at 09:11, Last updated: 30th Sep 2013 at 14:50

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Assay with a SOP

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: Quyen's sop

Data files: SysMO template, a_microarray from BII-S-2, dummy 2 and 1 hidden item

Snapshots: No snapshots

Created: 28th Aug 2012 at 10:20, Last updated: 26th Sep 2017 at 10:54

Modelling Assay with a SOP

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Biological problem addressed: Model Analysis Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

Models: Lin3, Potato and 1 hidden item

SOPs: Quyen's sop

Data files: No Data files

Snapshots: No snapshots

Created: 28th Aug 2012 at 10:21, Last updated: 20th Apr 2021 at 11:25

testing assay and techno types

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Protein-Protein Interaction Profiling

Technology type: Affinity Chromatography

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: ffsfasdf

Snapshots: No snapshots

Created: 9th Dec 2013 at 15:59, Last updated: 26th Sep 2017 at 10:54

Assay with one strain

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: Bacillus subtilis : NCIB3610 (wild-type / wild-type)

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 17th Feb 2014 at 10:28, Last updated: 21st Apr 2021 at 13:32

testing flux balance

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Flux Balance Analysis

Technology type: 2-hybrid System

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Apr 2014 at 09:57, Last updated: 26th Sep 2017 at 10:54

testing making an assay

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: SNP Detection

Technology type: Binding

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th Nov 2015 at 17:19, Last updated: 26th Sep 2017 at 10:54

testing href in description

SysMO DB

All creators

Stuart Owen

This a some description with a link to Google

This a some 2nd paragraph with a link to Twitter

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 10th Aug 2016 at 09:07, Last updated: 26th Sep 2017 at 10:54

Patient tests

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Transcriptomics

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: Disease template example

Snapshots: No snapshots

Created: 13th Sep 2016 at 10:30, Last updated: 26th Sep 2017 at 10:54

jyggiihhiuhiuhiuh

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 15th Sep 2016 at 12:46, Last updated: 26th Sep 2017 at 10:54

3 hidden items

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Disease template example

SysMO DB

All creators

Stuart Owen

No description specified

Creator: Stuart Owen

Submitter: Stuart Owen

Investigations: An example Investigation with Scale

Studies: a test study

Assays: Patient tests

Created: 10th Aug 2016 at 10:29

ffsfasdf

SysMO DB

All creators

Quyen Yamanaka

No description specified

Creator: Quyen Yamanaka

Submitter: Quyen Yamanaka

DOI: 10.5072/seek.datafile.94.1

Investigations: An example Investigation with Scale

Studies: a test study

Assays: testing assay and techno types

Download

Created: 3rd Jan 2013 at 17:14, Last updated: 26th Jun 2015 at 10:27

a_microarray from BII-S-2

SysMO DB

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Katy Wolstencroft

Results of transcriptional profile in Saccharomyces cerevisiae after rapamycin treatment

Creator: Katy Wolstencroft

Submitter: Katy Wolstencroft

Investigations: An example Investigation with Scale, Growth control of the eukaryote cell: a systems..., inv1

Studies: A time course analysis of transcription respon..., a test study and 1 hidden item

Assays: Assay with a SOP, Time course analysis of transcription, demo modelling analysis

Download

Created: 16th Oct 2009 at 14:56, Last updated: 5th Aug 2013 at 09:38

SysMO template

SysMO DB

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Quyen Yamanaka

No description specified

Creators: Quyen Yamanaka, testcreator

Submitter: Quyen Yamanaka

Investigations: An example Investigation with Scale, Glycerol Synthesis in Saccharomyces cerevisiae

Studies: Glycerol Synthesis Pathway, a test study

Assays: Assay with a SOP, Glycerol Synthesis Model construction

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Created: 16th Jul 2013 at 10:15, Last updated: 24th Jul 2013 at 09:43

dummy 2

SilicoTryp

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Quyen Yamanaka

No description specified

Creator: Quyen Yamanaka

Submitter: Quyen Yamanaka

Investigations: An example Investigation with Scale

Studies: a test study

Assays: Assay with a SOP

Download

Created: 5th Apr 2013 at 10:08, Last updated: 16th Apr 2013 at 10:12

1 hidden item

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Potato

SysMO DB

All creators

Stuart Owen

Potato model taken from JWS Online: http://jjj.mib.ac.uk/

Testing notification email

Creator: Stuart Owen

Submitter: Stuart Owen

Model type: Not specified

Model format: SBML

Environment: JWS Online

Organism: Not specified

Investigations: An example Investigation with Scale, inv1

Studies: a test study and 1 hidden item

Assays: Modelling Assay with a SOP, demo modelling analysis

Download

Created: 16th Oct 2009 at 10:59, Last updated: 19th Dec 2013 at 10:48

Lin3

SysMO DB

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Franco Boudrot

No description specified

Creator: Franco Boudrot

Submitter: Franco Boudrot

Model type: Not specified

Model format: Not specified

Environment: Not specified

Organism: Not specified

Investigations: An example Investigation with Scale, Glycolitic Flux in Lactococcus lactis

Studies: a test study and 1 hidden item

Assays: Modelling Assay with a SOP, example assay

Download

Created: 3rd May 2012 at 13:07, Last updated: 5th Apr 2013 at 09:02

1 hidden item

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Quyen's sop

SysMO DB

All creators

Quyen Yamanaka

edited to test subscription emails

Creators: None

Submitter: Quyen Yamanaka

Investigations: An example Investigation with Scale, Methods for interrelating 'omics data

Studies: Metabolomics data capture, a test study

Assays: Assay with a SOP, GLC incubation, Modelling Assay with a SOP

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Created: 11th Jun 2012 at 08:24, Last updated: 5th Apr 2013 at 09:02

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The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels

SysMO DB

Abstract (Expand)

The African annual fish Nothobranchius furzeri has over recent years been established as a model species for ageing-related studies. This is mainly based on its exceptionally short lifespan and the … presence of typical characteristics of vertebrate ageing. To substantiate its role as an alternative vertebrate ageing model, a transcript catalogue is needed, which can serve e.g. as basis for identifying ageing-related genes.

Authors: Andreas Petzold, Kathrin Reichwald, Marco Groth, Stefan Taudien, Nils Hartmann, Steffen Priebe, Dmitry Shagin, Christoph Englert, Matthias Platzer

Date Published: 16th Mar 2013

Publication Type: Not specified

PubMed ID: 23496936

Citation:

Created: 28th Aug 2013 at 11:21, Last updated: 24th Mar 2022 at 10:39