a_microarray from BII-S-2 Version 1
Results of transcriptional profile in Saccharomyces cerevisiae after rapamycin treatment
SEEK ID: https://testing.sysmo-db.org/data_files/8?version=1
Filename:
a_microarray.txt
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"Sample Name" "Protocol REF" "Extract Name" "Protocol REF" "Labeled Extract Name" "Label" "Term Source REF" "Term Accession Number" "Protocol REF" "Hybridization Assay Name" "Comment[ArrayExpress Accession]" "Comment[ArrayExpress Raw Data URL]" "Array Design REF" "Scan Name" "Array Data File" "Derived Array Data File" "Factor Value[dose]" "Unit" "Term Source REF" "Term Accession Number" "Factor Value[exposure time]" "Unit" "Term Source REF" "Term Accession Number" "Factor Value[compound]" "Term Source REF" "Term Accession Number" "NZ_0hrs_Grow_1" "mRNA extraction" "NZ_0hrs_Sample_1_Extract" "biotin labeling" "NZ_0hrs_Sample_1_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_0hrs_Sample_1_Labelled_Hyb1" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_0hrs_Sample_1_Labelled_Hyb1_Scan1" "E-MAXD-4-raw-data-426648549.txt" "E-MAXD-4-processed-data-1342566476.txt" "0" "ng /ml" "" "" "0" "hour" "UO" "32" "" "" "" "NZ_0hrs_Grow_1" "mRNA extraction" "NZ_1hrs_Drug_Sample_1_Extract" "biotin labeling" "NZ_1hrs_Drug_Sample_1_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_1hrs_Drug_Sample_1_Labelled_Hyb3" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_1hrs_Drug_Sample_1_Labelled_Hyb3_Scan3" "E-MAXD-4-raw-data-426648567.txt" "E-MAXD-4-processed-data-1342566476.txt" "200" "ng /ml" "" "" "1" "hour" "UO" "32" "rapamycin" "CHEBI" "9168" "NZ_0hrs_Grow_1" "mRNA extraction" "NZ_2hrs_Drug_Sample_1_Extract" "biotin labeling" "NZ_2hrs_Drug_Sample_1_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_2hrs_Drug_Sample_1_Labelled_Hyb7" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_2hrs_Drug_Sample_1_Labelled_Hyb7_Scan7" "E-MAXD-4-raw-data-426648585.txt" "E-MAXD-4-processed-data-1342566476.txt" "200" "ng /ml" "" "" "2" "hour" "UO" "32" "rapamycin" "CHEBI" "9168" "NZ_0hrs_Grow_1" "mRNA extraction" "NZ_4hrs_Drug_Sample_1_Extract" "biotin labeling" "NZ_4hrs_Drug_Sample_1_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_4hrs_Drug_Sample_1_Labelled_Hyb11" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_4hrs_Drug_Sample_1_Labelled_Hyb11_Scan11" "E-MAXD-4-raw-data-426648603.txt" "E-MAXD-4-processed-data-1342566476.txt" "200" "ng /ml" "" "" "4" "hour" "UO" "32" "rapamycin" "CHEBI" "9168" "NZ_0hrs_Grow_1" "mRNA extraction" "NZ_2hrs_Vehicle_Sample_1_Extract" "biotin labeling" "NZ_2hrs_Vehicle_Sample_1_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_2hrs_Vehicle_Sample_1_Labelled_Hyb9" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_2hrs_Vehicle_Sample_1_Labelled_Hyb9_Scan9" "E-MAXD-4-raw-data-426648639.txt" "E-MAXD-4-processed-data-1342566476.txt" "0" "ng /ml" "" "" "2" "hour" "UO" "32" "drug vehicle (90% ethanol/10% tween-20)" "" "" "NZ_0hrs_Grow_1" "mRNA extraction" "NZ_4hrs_Vehicle_Sample_1_Extract" "biotin labeling" "NZ_4hrs_Vehicle_Sample_1_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_4hrs_Vehicle_Sample_1_Labelled_Hyb13" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_4hrs_Vehicle_Sample_1_Labelled_Hyb13_Scan13" "E-MAXD-4-raw-data-426648657.txt" "E-MAXD-4-processed-data-1342566476.txt" "0" "ng /ml" "" "" "4" "hour" "UO" "32" "drug vehicle (90% ethanol/10% tween-20)" "" "" "NZ_0hrs_Grow_1" "mRNA extraction" "NZ_1hrs_Vehicle_Sample_1_Extract" "biotin labeling" "NZ_1hrs_Vehicle_Sample_1_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_1hrs_Vehicle_Sample_1_Labelled_Hyb5" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_1hrs_Vehicle_Sample_1_Labelled_Hyb5_Scan5" "E-MAXD-4-raw-data-426648621.txt" "E-MAXD-4-processed-data-1342566476.txt" "0" "ng /ml" "" "" "1" "hour" "UO" "32" "drug vehicle (90% ethanol/10% tween-20)" "" "" "NZ_0hrs_Grow_2" "mRNA extraction" "NZ_0hrs_Sample_2_Extract" "biotin labeling" "NZ_0hrs_Sample_2_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_0hrs_Sample_2_Labelled_Hyb2" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_0hrs_Sample_2_Labelled_Hyb2_Scan2" "E-MAXD-4-raw-data-426648675.txt" "E-MAXD-4-processed-data-1342566476.txt" "0" "ng /ml" "" "" "0" "hour" "UO" "32" "" "" "" "NZ_0hrs_Grow_2" "mRNA extraction" "NZ_1hrs_Drug_Sample_2_Extract" "biotin labeling" "NZ_1hrs_Drug_Sample_2_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_1hrs_Drug_Sample_2_Labelled_Hyb4" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_1hrs_Drug_Sample_2_Labelled_Hyb4_Scan4" "E-MAXD-4-raw-data-426648693.txt" "E-MAXD-4-processed-data-1342566476.txt" "200" "ng /ml" "" "" "1" "hour" "UO" "32" "rapamycin" "CHEBI" "9168" "NZ_0hrs_Grow_2" "mRNA extraction" "NZ_4hrs_Drug_Sample_2_Extract" "biotin labeling" "NZ_4hrs_Drug_Sample_2_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_4hrs_Drug_Sample_2_Labelled_Hyb12" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_4hrs_Drug_Sample_2_Labelled_Hyb12_Scan12" "E-MAXD-4-raw-data-426648729.txt" "E-MAXD-4-processed-data-1342566476.txt" "200" "ng /ml" "" "" "4" "hour" "UO" "32" "rapamycin" "CHEBI" "9168" "NZ_0hrs_Grow_2" "mRNA extraction" "NZ_2hrs_Drug_Sample_2_Extract" "biotin labeling" "NZ_2hrs_Drug_Sample_2_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_2hrs_Drug_Sample_2_Labelled_Hyb8" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_2hrs_Drug_Sample_2_Labelled_Hyb8_Scan8" "E-MAXD-4-raw-data-426648711.txt" "E-MAXD-4-processed-data-1342566476.txt" "200" "ng /ml" "" "" "2" "hour" "UO" "32" "rapamycin" "CHEBI" "9168" "NZ_0hrs_Grow_2" "mRNA extraction" "NZ_1hrs_Vehicle_Sample_2_Extract" "biotin labeling" "NZ_1hrs_Vehicle_Sample_2_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_1hrs_Vehicle_Sample_2_Labelled_Hyb6" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_1hrs_Vehicle_Sample_2_Labelled_Hyb6_Scan6" "E-MAXD-4-raw-data-426648747.txt" "E-MAXD-4-processed-data-1342566476.txt" "0" "ng /ml" "" "" "1" "hour" "UO" "32" "drug vehicle (90% ethanol/10% tween-20)" "" "" "NZ_0hrs_Grow_2" "mRNA extraction" "NZ_2hrs_Vehicle_Sample_2_Extract" "biotin labeling" "NZ_2hrs_Vehicle_Sample_2_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_2hrs_Vehicle_Sample_2_Labelled_Hyb10" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_2hrs_Vehicle_Sample_2_Labelled_Hyb10_Scan10" "E-MAXD-4-raw-data-426648765.txt" "E-MAXD-4-processed-data-1342566476.txt" "0" "ng /ml" "" "" "2" "hour" "UO" "32" "drug vehicle (90% ethanol/10% tween-20)" "" "" "NZ_0hrs_Grow_2" "mRNA extraction" "NZ_4hrs_Vehicle_Sample_2_Extract" "biotin labeling" "NZ_4hrs_Vehicle_Sample_2_Labelled" "biotin" "" "" "EukGE-WS4" "NZ_4hrs_Vehicle_Sample_2_Labelled_Hyb14" "E-MAXD-4" "E-MAXD-4" "A-AFFY-27" "NZ_4hrs_Vehicle_Sample_2_Labelled_Hyb14_Scan14" "E-MAXD-4-raw-data-426648783.txt" "E-MAXD-4-processed-data-1342566476.txt" "0" "ng /ml" "" "" "4" "hour" "UO" "32" "drug vehicle (90% ethanol/10% tween-20)" "" ""
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Created: 16th Oct 2009 at 14:56
Last updated: 5th Aug 2013 at 09:38
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Version 1 (earliest) Created 16th Oct 2009 at 14:56 by Katy Wolstencroft
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I am a Research Fellow at the University of Manchester, working in Bioinformatics and Computer Science. I am also a guest researcher at the Vrije Universiteit.My research interests include scientific workflows, semantic discovery, and applying ontology technologies to biological data
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Submitter: Stuart Owen
Studies: a test study, fffff
Assays: Assay with a SOP, Assay with one strain, Modelling Assay with a SOP, Patient tests, assay with samples, jyggiihhiuhiuhiuh, test publish, testing assay and techno types, testing flux balance, testing href in description, testing making an assay
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Assays: Test Assay for Publishing, Testing assay for project browser thingy, demo modelling analysis, ttt
Cell growth underlies many key cellular and developmental processes, yet a limited number of studies have been carried out on cell-growth regulation. Comprehensive studies at the transcriptional, proteomic and metabolic levels under defined controlled conditions are currently lacking.
This investigation shows public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1) Organism: Saccharomyces Cerevisiae
Submitter: Katy Wolstencroft
Studies: A time course analysis of transcription response in yeast treated with ..., Can yeast glycolysis be understood in terms of in vitro kinetics of the ..., test study
Assays: Changes in flux on the metabolome, Changes in flux on the proteome, Changes in flux on the transcriptome, Glycolysis in Saccharomyces cerevisiae, Time course analysis of transcription, Transcriptional profiling, new assay from data file, test assay, test for biol problem
Submitter: Stuart Owen
Investigation: An example Investigation with Scale
Assays: Assay with a SOP, Assay with one strain, Modelling Assay with a SOP, Patient tests, assay with samples, jyggiihhiuhiuhiuh, test publish, testing assay and techno types, testing flux balance, testing href in description, testing making an assay
Comprehensive high-throughput analyses at the levels of mRNAs, proteins, and metabolites, and studies on gene expression patterns are required for systems biology studies of cell growth [4,26-29]. Although such comprehensive data sets are lacking, many studies have pointed to a central role for the target-of-rapamycin (TOR) signal transduction pathway in growth control. TOR is a serine/threonine kinase that has been conserved from yeasts to mammals; it integrates signals from nutrients or growth ...
Submitter: Katy Wolstencroft
Investigation: Growth control of the eukaryote cell: a systems...
Assay for transcriptional profiling time course in yeast treated with rapamycin
This is public data from the BioInvestigation Index (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-2)
Submitter: Katy Wolstencroft
Assay type: Transcriptional Profiling
Technology type: Microarray
Investigation: Growth control of the eukaryote cell: a systems...
Submitter: Stuart Owen
Biological problem addressed: Model Analysis Type
Investigation: inv1
Study: 1 hidden item
Submitter: Stuart Owen
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: An example Investigation with Scale
Study: a test study
