An example Investigation with Scale

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SEEK ID: https://testing.sysmo-db.org/investigations/5

Projects: SysMO DB

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Not specified

Submitter

Stuart Owen

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Views: 1655

Created: 26th Aug 2011 at 09:11

Last updated: 30th Sep 2013 at 14:50

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People (1)
Programmes (1)
Projects (1)
Studies (2)
Assays (11+3)
Data files (5+1)
Models (2+1)
SOPs (1)
Publications (1)
Samples (3+9)

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Stuart Owen

Projects: SysMO DB, BaCell-SysMO, SulfoSys, SysMOLAB, <script>alert('xss-project-title')</script> & Test Project, Refinery NDD, Gatekeeper Testing Project, Hadas' project for Stuart, SilicoTryp, Gatekeeper test, Dummy project, Taverna Project, testing assigning organisms, Xiaoming Test, test, flora test project (2), api testing

Institutions: HITS gGmbH, DSM Nutritional Products Ltd., Manchester Centre for Integrative Systems Biology, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, School of Computer Science, University of Manchester, Universitat Autònoma de Barcelona, Helmholtz Centre for Infection Research, Department of Computer Science, ETH Zurich

https://orcid.org/0000-0003-2130-0865

Expertise: talking, walking, Data Management, Software Engineering, Software Architecture, Repositories, Microbiology, fishing, Proteomics

Tools: mouth, legs, Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, Microarray analysis, SBML

The Senior Research Software Engineer on SysMO-DB team.

Developing and testing SysMO SEEK, WorkflowHub and RightField.

search test ... Thy‐1 restricts steatosis Böät squiggle

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Dummy programme

No description specified

Projects: SysMO DB

Web page: Not specified

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SysMO DB

The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:

maximises the ‘shelf life’ and utility of data generated by SysMO;
provides an integrated platform for the dissemination ...

Programme: Dummy programme

Public web page: http://www.sysmo-db.org/

Organisms: Lactic Acid Bacteria, Agapornis

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fffff

SysMO DB

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Stuart Owen

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Submitter: Stuart Owen

Investigation: An example Investigation with Scale

Assays: No Assays

Snapshots: No snapshots

Created: 26th Aug 2011 at 09:23, Last updated: 16th Apr 2013 at 10:10

a test study

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Investigation: An example Investigation with Scale

Assays: Assay with a SOP, Assay with one strain, Modelling Assay with a SOP, Patient tests, assay with samples, jyggiihhiuhiuhiuh, test publish, testing assay and techno types, testing flux balance, testing href in description, testing making an assay

Snapshots: No snapshots

Created: 30th Aug 2011 at 15:06, Last updated: 5th Apr 2013 at 09:02

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Assay with a SOP

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: Quyen's sop

Data files: SysMO template, a_microarray from BII-S-2, dummy 2 and 1 hidden item

Snapshots: No snapshots

Created: 28th Aug 2012 at 10:20, Last updated: 26th Sep 2017 at 10:54

Modelling Assay with a SOP

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Biological problem addressed: Model Analysis Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

Models: Lin3, Potato and 1 hidden item

SOPs: Quyen's sop

Data files: No Data files

Snapshots: No snapshots

Created: 28th Aug 2012 at 10:21, Last updated: 20th Apr 2021 at 11:25

testing assay and techno types

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Protein-Protein Interaction Profiling

Technology type: Affinity Chromatography

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: ffsfasdf

Snapshots: No snapshots

Created: 9th Dec 2013 at 15:59, Last updated: 26th Sep 2017 at 10:54

Assay with one strain

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: Bacillus subtilis : NCIB3610 (wild-type / wild-type)

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 17th Feb 2014 at 10:28, Last updated: 21st Apr 2021 at 13:32

testing flux balance

SysMO DB

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Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Flux Balance Analysis

Technology type: 2-hybrid System

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 8th Apr 2014 at 09:57, Last updated: 26th Sep 2017 at 10:54

testing making an assay

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: SNP Detection

Technology type: Binding

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th Nov 2015 at 17:19, Last updated: 26th Sep 2017 at 10:54

testing href in description

SysMO DB

All creators

Stuart Owen

This a some description with a link to Google

This a some 2nd paragraph with a link to Twitter

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 10th Aug 2016 at 09:07, Last updated: 26th Sep 2017 at 10:54

Patient tests

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Transcriptomics

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: Disease template example

Snapshots: No snapshots

Created: 13th Sep 2016 at 10:30, Last updated: 26th Sep 2017 at 10:54

jyggiihhiuhiuhiuh

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 15th Sep 2016 at 12:46, Last updated: 26th Sep 2017 at 10:54

test publish

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 30th May 2024 at 14:55, Last updated: 30th May 2024 at 14:55

assay with samples

SysMO DB

All creators

Stuart Owen

No description specified

Submitter: Stuart Owen

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: An example Investigation with Scale

Study: a test study

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 9th Jul 2025 at 14:21, Last updated: 9th Jul 2025 at 14:21

3 hidden items

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Disease template example

SysMO DB

All creators

Stuart Owen

No description specified

Creator: Stuart Owen

Submitter: Stuart Owen

Investigations: An example Investigation with Scale

Studies: a test study

Assays: Patient tests

Created: 10th Aug 2016 at 10:29

ffsfasdf

SysMO DB

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Quyen Yamanaka

No description specified

Creator: Quyen Yamanaka

Submitter: Quyen Yamanaka

DOI: 10.5072/seek.datafile.94.1

Investigations: An example Investigation with Scale

Studies: a test study

Assays: testing assay and techno types

Download

Created: 3rd Jan 2013 at 17:14, Last updated: 26th Jun 2015 at 10:27

a_microarray from BII-S-2

SysMO DB

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Katy Wolstencroft

Results of transcriptional profile in Saccharomyces cerevisiae after rapamycin treatment

Creator: Katy Wolstencroft

Submitter: Katy Wolstencroft

Investigations: An example Investigation with Scale, Growth control of the eukaryote cell: a systems..., inv1

Studies: A time course analysis of transcription respon..., a test study and 1 hidden item

Assays: Assay with a SOP, Time course analysis of transcription, demo modelling analysis

Download

Created: 16th Oct 2009 at 14:56, Last updated: 5th Aug 2013 at 09:38

SysMO template

SysMO DB

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Quyen Yamanaka

No description specified

Creators: Quyen Yamanaka, testcreator

Submitter: Quyen Yamanaka

Investigations: An example Investigation with Scale, Glycerol Synthesis in Saccharomyces cerevisiae

Studies: Glycerol Synthesis Pathway, a test study

Assays: Assay with a SOP, Glycerol Synthesis Model construction

Download

Created: 16th Jul 2013 at 10:15, Last updated: 24th Jul 2013 at 09:43

dummy 2

SilicoTryp

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Quyen Yamanaka

No description specified

Creator: Quyen Yamanaka

Submitter: Quyen Yamanaka

Investigations: An example Investigation with Scale

Studies: a test study

Assays: Assay with a SOP

Download

Created: 5th Apr 2013 at 10:08, Last updated: 16th Apr 2013 at 10:12

1 hidden item

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Potato

SysMO DB

All creators

Stuart Owen

Potato model taken from JWS Online: http://jjj.mib.ac.uk/

Testing notification email

Creator: Stuart Owen

Submitter: Stuart Owen

Model type: Not specified

Model format: SBML

Environment: JWS Online

Organism: Not specified

Investigations: An example Investigation with Scale, inv1

Studies: a test study and 1 hidden item

Assays: Modelling Assay with a SOP, demo modelling analysis

Download

Created: 16th Oct 2009 at 10:59, Last updated: 19th Dec 2013 at 10:48

Lin3

SysMO DB

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Franco Boudrot

No description specified

Creator: Franco Boudrot

Submitter: Franco Boudrot

Model type: Not specified

Model format: Not specified

Environment: Not specified

Organism: Not specified

Investigations: An example Investigation with Scale, Glycolitic Flux in Lactococcus lactis

Studies: a test study and 1 hidden item

Assays: Modelling Assay with a SOP, example assay

Download

Created: 3rd May 2012 at 13:07, Last updated: 5th Apr 2013 at 09:02

1 hidden item

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Quyen's sop

SysMO DB

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Quyen Yamanaka

edited to test subscription emails

Creators: None

Submitter: Quyen Yamanaka

Investigations: An example Investigation with Scale, Methods for interrelating 'omics data

Studies: Metabolomics data capture, a test study

Assays: Assay with a SOP, GLC incubation, Modelling Assay with a SOP

Download

Created: 11th Jun 2012 at 08:24, Last updated: 5th Apr 2013 at 09:02

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The transcript catalogue of the short-lived fish Nothobranchius furzeri provides insights into age-dependent changes of mRNA levels

SysMO DB

Abstract (Expand)

The African annual fish Nothobranchius furzeri has over recent years been established as a model species for ageing-related studies. This is mainly based on its exceptionally short lifespan and the … presence of typical characteristics of vertebrate ageing. To substantiate its role as an alternative vertebrate ageing model, a transcript catalogue is needed, which can serve e.g. as basis for identifying ageing-related genes.

Authors: Andreas Petzold, Kathrin Reichwald, Marco Groth, Stefan Taudien, Nils Hartmann, Steffen Priebe, Dmitry Shagin, Christoph Englert, Matthias Platzer

Date Published: 16th Mar 2013

Publication Type: Not specified

PubMed ID: 23496936

Citation:

Created: 28th Aug 2013 at 11:21, Last updated: 24th Mar 2022 at 10:39

Advanced Samples list for this Investigation with search and filtering

SysMO DB

Type: Weather

Creators: None

Submitter: Deleted submitter

Created: 3rd Nov 2020 at 21:44

SysMO DB

Type: Weather

Creators: None

Submitter: Deleted submitter

Created: 3rd Nov 2020 at 21:44

SysMO DB

Type: Weather

Creators: None

Submitter: Deleted submitter

Created: 3rd Nov 2020 at 21:44

9 hidden items