Testing SEEK

/output/Desiree_SRR10416849/Log.progress.out

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

/scripts/annotate.sh

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

_p_stRT

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Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

/intermediate/trueSingle.polyploid.tr.fasta

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/output/annot_stCuSTr-D_cds_all.zip

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

/intermediate/PGSC/chrNameLength.txt

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Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

/intermediate/trueSingle.polyploid.cds.fasta

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/output/annot_stPanTr.aa.zip

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

/output/Desiree_SRR10416849/Log.progress.out

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

/intermediate/PGSC/chrName.txt

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Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

/intermediate/indexGFFmerged.log

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Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

/output/annot_stCuSTr-D_aa_alternatives.zip

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Creator: Andrej Blejec

Submitter: Andrej Blejec

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Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

/output/trueSingle.polyploid.tr_kreport.txt

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/output/Desiree_SRR10416847/Log.final.out

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

/output/annot_stCuSTr-P_tr_all.zip

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Submitter: Andrej Blejec

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Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

/intermediate/gff-merged/chrName.txt

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Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

/output/annot_stPanTr_alt.aa.zip

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

/output/annot_stCuSTr-D_tr_all.zip

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

/output/PW363_report.txt

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/output/gff-merged_SRR10416847/Log.progress.out

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

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Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

/output/stCuSTr-P_tr_representatives_transrate_usingReference/stCuSTr-P_tr_representatives/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.nin

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Creator: Andrej Blejec

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Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 17:28

/output/gff-merged_SRR10416849/Log.final.out

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Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

/output/PGSC_drought123/Log.out

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Submitter: Andrej Blejec

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Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:27, Last updated: 13th May 2021 at 17:28

/output/stCuSTr-R_tr_representatives_transrate_usingReference/stCuSTr-R_tr_representatives/stCuSTr-R_tr_representatives.nsq

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:57

/output/gff-merged_SRR10416847/Log.out

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 11:57, Last updated: 13th May 2021 at 11:57

/output/Desiree_drought123/Log.out

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 11:56

/output/stCuSTr-P_tr_representatives_transrate_usingReference/stCuSTr-P_tr_representatives/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.nhr

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Submitter: Andrej Blejec

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Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:56

/output/annot_stCuSTr-P_aa_all.zip

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Creator: Andrej Blejec

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Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 11:56

/output/PGSC_SRR10416849/Log.out

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Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 11:56

/output/PGSC_drought123/Log.progress.out

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Submitter: Andrej Blejec

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Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 11:56

/output/stCuSTr-R_tr_representatives_transrate_usingReference/stCuSTr-R_tr_representatives/stCuSTr-R_tr_representatives.nin

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Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:56

/output/PGSC_DM_v3.4_transcript-update_representative_transrate_usingReference/PGSC_DM_v3.4_transcript-update_representative

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Creator: Andrej Blejec

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Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:46

/output/PGSC_DM_v3.4_transcript-update_representative_transrate_usingReference/PGSC_DM_v3.4_transcript-update_representative

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Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:43

/bla.r - study 148

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Data file assoc with assay

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 20th Nov 2019 at 16:29

/bla.r

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Data file assoc with assay

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 20th Nov 2019 at 16:28

/bla.r

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Testing of upload

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 20th Nov 2019 at 16:22

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.ph

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

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Submitter: Andrej Blejec

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Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:26, Last updated: 15th Nov 2019 at 00:26

/output/Rywal_rep.tr.txt

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Change license MIT-ni id

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

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Created: 15th Nov 2019 at 00:26, Last updated: 25th Nov 2019 at 15:26

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_myLog.txt

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

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Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:26, Last updated: 15th Nov 2019 at 00:26

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt_myLog.txt

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

/output/PW363_tr.cds.tsv.gz

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.1_filtering

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 00:25

/scripts/06_archive_files.sh

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.1_filtering

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Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.fasta

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.aligned.mview.html

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

/output/5cv_weak-components.txt

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:25

/scripts/i1.2_parse-fasta-files-pt2.pl

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

/output/Desiree.cds_solanumTuberosum.out.ENCHformat_top1.tsv.gz

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

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Created: 15th Nov 2019 at 00:24

/scripts/01_potato_tr_evigene_IPS_commands.txt

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

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Created: 15th Nov 2019 at 00:24, Last updated: 15th Nov 2019 at 00:24

/scripts/i5.3_prepare-fastas.sh

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

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Created: 15th Nov 2019 at 00:24, Last updated: 15th Nov 2019 at 00:24

/scripts/03_archive_files.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

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Created: 15th Nov 2019 at 00:24, Last updated: 15th Nov 2019 at 00:24

/output/dropset/3cv_gffmerged_cds.drop.fasta.gz

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

/output/Desiree.cds_SP_TrEMBL_plants.out.ENCHformat_top1.tsv.gz

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Created: 15th Nov 2019 at 00:24

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

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Created: 15th Nov 2019 at 00:24

/scripts/04_summary.sh

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.1_filtering

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 00:23, Last updated: 15th Nov 2019 at 00:23

/scripts/i5.1_parse-cdhit-2d.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

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Created: 15th Nov 2019 at 00:23, Last updated: 15th Nov 2019 at 00:23

/output/PW363.tr_SwissProt_TrEMBL.out.ENCHformat_top1.tsv.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

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Created: 15th Nov 2019 at 00:23

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:23, Last updated: 15th Nov 2019 at 00:23

/reports/BUSCO_plots.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_05_BUSCO-Stat

Download

Created: 15th Nov 2019 at 00:23

/scripts/i1.3_parse-headers.pl

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

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Created: 15th Nov 2019 at 00:23, Last updated: 15th Nov 2019 at 00:23

/output/fasta_1B_alt-per-cv/stCuSTr-P_tr_alternatives.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

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Created: 15th Nov 2019 at 00:22

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:21

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:20

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:20

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:20

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:20, Last updated: 15th Nov 2019 at 00:20

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2019 at 12:23, Last updated: 14th Nov 2019 at 12:23

/scripts/01_run_commands.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2019 at 12:23, Last updated: 14th Nov 2019 at 12:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2019 at 12:23, Last updated: 14th Nov 2019 at 12:23

/output/3cvs_tr.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2019 at 12:23

/output/3cvs_cds.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2019 at 12:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2019 at 12:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: No Studies

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Created: 14th Nov 2019 at 12:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: No Studies

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Created: 14th Nov 2019 at 12:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2019 at 12:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2019 at 12:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: No Studies

Assays: No Assays

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Created: 14th Nov 2019 at 12:23, Last updated: 14th Nov 2019 at 12:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

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Assays: _A_01_evigene

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Created: 14th Nov 2019 at 12:17, Last updated: 14th Nov 2019 at 12:17

/scripts/01_run_commands.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

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Assays: _A_01_evigene

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Created: 14th Nov 2019 at 12:17, Last updated: 14th Nov 2019 at 12:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Assays: _A_01_evigene

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Created: 14th Nov 2019 at 12:17, Last updated: 14th Nov 2019 at 12:17

/output/3cvs_tr.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17

/output/3cvs_cds.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 14th Nov 2019 at 12:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 14th Nov 2019 at 12:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

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Assays: _A_01_evigene

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Created: 14th Nov 2019 at 12:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

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Created: 14th Nov 2019 at 12:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 14th Nov 2019 at 12:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Created: 14th Nov 2019 at 12:17

/reports/SupplementaryTableS1-Input_sequences_information.xlsx

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

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Created: 14th Nov 2019 at 12:17, Last updated: 14th Nov 2019 at 12:17

_p_stRT

_p_stRT/_I_STRT/_S_01_sequences/_A__S_01_sequences-files

Creator: Andrej Blejec

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Created: 14th Nov 2019 at 11:28, Last updated: 14th Nov 2019 at 11:28

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

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Assays: _A_01_evigene

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Created: 13th Nov 2019 at 22:34, Last updated: 13th Nov 2019 at 22:34

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 13th Nov 2019 at 22:34

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 13th Nov 2019 at 22:34

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 13th Nov 2019 at 22:33

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 13th Nov 2019 at 22:33

/output/PW363_initial_transrate_usingReference_assemblies.csv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 13th Nov 2019 at 22:33, Last updated: 13th Nov 2019 at 22:33

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

/output/PW363_initial_transrate_usingReference.log

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

/output/Desiree_initial_transrate_usingReference_assemblies.csv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

/output/Desiree_initial_transrate_usingReference.log

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

/scripts/STARlongMatchAnnot_commands_ENCODE_denovo_param.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

/output/output_2_matchAnnot-parsed-txt.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Download

Created: 13th Nov 2019 at 22:30

/output/output_1_STARlong-logs-n-SJ.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Download

Created: 13th Nov 2019 at 22:30

/scripts/STAR_commands.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:30

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:29

/output/output_STAR_logs-n-SJ.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

Download

Created: 13th Nov 2019 at 22:29

/scripts/02_reshape_merge_aggregate_filter.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:29

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:29

/scripts/01_potato_tr_evigene_IPS_commands.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:29

/reports/IPS_PowerQuery_PivotTable.xlsx

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:29

/output/Rywal_IPS_filtered_aggregated_filtered.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

/output/PW363_IPS_filtered_aggregated_filtered.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

/output/Desiree_IPS_filtered_aggregated_filtered.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

/intermediate/Rywal_IPS/all.okay.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

/intermediate/Rywal_IPS/all.okalt.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

/intermediate/PW363_IPS/all.okay.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

/intermediate/PW363_IPS/all.okalt.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

/intermediate/Desiree_IPS/all.okay.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

/intermediate/Desiree_IPS/all.okalt.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28, Last updated: 13th Nov 2019 at 22:28

/scripts/countRywal.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Download

Created: 13th Nov 2019 at 22:28, Last updated: 13th Nov 2019 at 22:28

/scripts/countPW363.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Download

Created: 13th Nov 2019 at 22:28, Last updated: 13th Nov 2019 at 22:28

/scripts/countDesiree.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/output/Rywal_cnt_assemblies.txt

Download

Created: 13th Nov 2019 at 22:28, Last updated: 13th Nov 2019 at 22:28

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/output/PW363_cnt_assemblies.txt

Download

Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/output/Desiree_cnt_assemblies.txt

Download

Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/intermediate_Rywal.tar.gz

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Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/intermediate_PW363.tar.gz

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Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/intermediate_Desiree.tar.gz

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Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Download

Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/scripts/00_get_tools_and_export_paths.txt

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Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

/scripts/01_run_BUSCO.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Download

Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Download

Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

/output/Rywal_repAlt.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Download

Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

/output/Rywal_rep.tr.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Download

Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

/output/Rywal_rep.aa.txt

_p_stRT

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Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

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Created: 13th Nov 2019 at 22:26, Last updated: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:26, Last updated: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:26, Last updated: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:26, Last updated: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:26, Last updated: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:26, Last updated: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:26

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Created: 13th Nov 2019 at 22:25, Last updated: 13th Nov 2019 at 22:25

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Created: 10th Nov 2019 at 23:24, Last updated: 10th Nov 2019 at 23:24

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Created: 10th Nov 2019 at 23:23

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

/scripts/02_run_5cv.fasta_MSA.sh

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:23, Last updated: 10th Nov 2019 at 23:23

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt_myLog.txt

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.aligned.mview.html

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Created: 10th Nov 2019 at 23:22, Last updated: 10th Nov 2019 at 23:22

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Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:22

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.ph

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.aligned.mview.html

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Investigations: _I_STRT-1

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.aligned

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

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Download

Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.aligned.mview.html

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Created: 10th Nov 2019 at 23:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.aligned

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Creator: Andrej Blejec

Submitter: Andrej Blejec

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Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt_myLog.txt

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:21, Last updated: 10th Nov 2019 at 23:21

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.fasta

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.aligned.mview.html

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.aligned

_p_stRT

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt_myLog.txt

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.ph

_p_stRT

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.fasta

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.aligned.mview.html

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.aligned

_p_stRT

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_myLog.txt

_p_stRT

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_.err.txt

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.ph

_p_stRT

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.fasta

_p_stRT

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.aligned.mview.html

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.aligned

_p_stRT

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_myLog.txt

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_.err.txt

_p_stRT

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.ph

_p_stRT

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.fasta

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Created: 10th Nov 2019 at 23:20, Last updated: 10th Nov 2019 at 23:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.aligned.mview.html

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.aligned

_p_stRT

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Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

/output/5cv_weak-components.txt

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

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Created: 10th Nov 2019 at 23:19

/input/selected_4_wc.tar.gz

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

/input/D_P_R_g.tar.gz

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

/scripts/run_BUSCO_commands.sh

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_BUSCO_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/short_summary.tar

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_BUSCO_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/BUSCO_stPanTr_embryophyta_odb9.tsv

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_BUSCO_1_3cvs-gffmerged

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_BUSCO_1_3cvs-gffmerged

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/scripts/i4.1_compress-fastas.sh

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/scripts/i3.1_prepare-fastas-pt1.pl

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/scripts/i2.4_prepare-rep-component-table.pl

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/scripts/i2.3_parse-weak-components.pl

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/scripts/i2.1_prepare-network.pl

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/scripts/i1.3_parse-headers.pl

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Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/scripts/i1.2_parse-fasta-files-pt2.pl

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Created: 10th Nov 2019 at 23:18, Last updated: 10th Nov 2019 at 23:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

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/scripts/i1.2_parse-fasta-files-pt1.pl

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Created: 10th Nov 2019 at 23:18, Last updated: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/scripts/i1.0_copy-to-input.txt

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Created: 10th Nov 2019 at 23:18, Last updated: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/stPanTr_tr_representatives.fasta.gz

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Created: 10th Nov 2019 at 23:18, Last updated: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/stPanTr_tr_alternatives.fasta.gz

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Created: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/stPanTr_cds_representatives.fasta.gz

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Created: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/stPanTr_cds_alternatives.fasta.gz

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Created: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/stPanTr_aa_representatives.fasta.gz

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Created: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/stPanTr_aa_alternatives.fasta.gz

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Created: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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/input/phureja_sequences_keep.txt.gz

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Created: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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Created: 10th Nov 2019 at 23:18

/input/pantr_tr.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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Created: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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Created: 10th Nov 2019 at 23:18

/input/pantr_aa.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

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Created: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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Created: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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Created: 10th Nov 2019 at 23:18, Last updated: 10th Nov 2019 at 23:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

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/scripts/01_run_3cv_gffmerged_cds_commands.sh

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Created: 10th Nov 2019 at 23:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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/output/retrieve/diff.tr.IDs.txt.gz

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Created: 10th Nov 2019 at 23:17, Last updated: 10th Nov 2019 at 23:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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/output/retrieve/diff.cds.IDs.txt.gz

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Created: 10th Nov 2019 at 23:17, Last updated: 10th Nov 2019 at 23:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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/output/retrieve/diff.aa.IDs.txt.gz

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Created: 10th Nov 2019 at 23:17, Last updated: 10th Nov 2019 at 23:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/okayset/3cv_gffmerged_cds.okay.fasta.gz

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Created: 10th Nov 2019 at 23:17, Last updated: 10th Nov 2019 at 23:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

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/output/okayset/3cv_gffmerged_cds.okay.cds.gz

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO

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/output/BUSCOall_embryophyta_odb9.tsv

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