The SEEK TESTING

/output/Desiree.cds_SP_TrEMBL_plants.out.ENCHformat_top1.tsv.gz

Scales: Not specified

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Created: 15th Nov 2019 at 01:24

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

Scales: Not specified

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Created: 15th Nov 2019 at 01:24

/scripts/04_summary.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.1_filtering

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 01:23, Last updated: 15th Nov 2019 at 01:23

/scripts/i5.1_parse-cdhit-2d.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

Scales: Not specified

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Created: 15th Nov 2019 at 01:23, Last updated: 15th Nov 2019 at 01:23

/output/PW363.tr_SwissProt_TrEMBL.out.ENCHformat_top1.tsv.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

Scales: Not specified

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Created: 15th Nov 2019 at 01:23

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

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Created: 15th Nov 2019 at 01:23, Last updated: 15th Nov 2019 at 01:23

/reports/BUSCO_plots.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_05_BUSCO-Stat

Scales: Not specified

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Created: 15th Nov 2019 at 01:23

/scripts/i1.3_parse-headers.pl

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

Scales: Not specified

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Created: 15th Nov 2019 at 01:23, Last updated: 15th Nov 2019 at 01:23

/output/fasta_1B_alt-per-cv/stCuSTr-P_tr_alternatives.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

Scales: Not specified

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Created: 15th Nov 2019 at 01:22

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 15th Nov 2019 at 01:21

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 15th Nov 2019 at 01:20

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 15th Nov 2019 at 01:20

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 15th Nov 2019 at 01:20

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 15th Nov 2019 at 01:20, Last updated: 15th Nov 2019 at 01:20

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

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Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23, Last updated: 14th Nov 2019 at 13:23

/scripts/01_run_commands.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23, Last updated: 14th Nov 2019 at 13:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23, Last updated: 14th Nov 2019 at 13:23

/output/3cvs_tr.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23

/output/3cvs_cds.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Scales: Not specified

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Created: 14th Nov 2019 at 13:23, Last updated: 14th Nov 2019 at 13:23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17, Last updated: 14th Nov 2019 at 13:17

/scripts/01_run_commands.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17, Last updated: 14th Nov 2019 at 13:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17, Last updated: 14th Nov 2019 at 13:17

/output/3cvs_tr.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17

/output/3cvs_cds.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 14th Nov 2019 at 13:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17

/reports/SupplementaryTableS1-Input_sequences_information.xlsx

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 14th Nov 2019 at 13:17, Last updated: 14th Nov 2019 at 13:17

_p_stRT

_p_stRT/_I_STRT/_S_01_sequences/_A__S_01_sequences-files

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_01_sequences

Assays: _A__S_01_sequences-files

Scales: Not specified

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Created: 14th Nov 2019 at 12:28, Last updated: 14th Nov 2019 at 12:28

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 13th Nov 2019 at 23:34, Last updated: 13th Nov 2019 at 23:34

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 13th Nov 2019 at 23:34

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 13th Nov 2019 at 23:34

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:33

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:33

/output/PW363_initial_transrate_usingReference_assemblies.csv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

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Created: 13th Nov 2019 at 23:33, Last updated: 13th Nov 2019 at 23:33

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:30, Last updated: 13th Nov 2019 at 23:30

/output/PW363_initial_transrate_usingReference.log

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:30, Last updated: 13th Nov 2019 at 23:30

/output/Desiree_initial_transrate_usingReference_assemblies.csv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:30, Last updated: 13th Nov 2019 at 23:30

/output/Desiree_initial_transrate_usingReference.log

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:30, Last updated: 13th Nov 2019 at 23:30

/scripts/STARlongMatchAnnot_commands_ENCODE_denovo_param.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Scales: Not specified

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Created: 13th Nov 2019 at 23:30, Last updated: 13th Nov 2019 at 23:30

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Scales: Not specified

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Created: 13th Nov 2019 at 23:30, Last updated: 13th Nov 2019 at 23:30

/output/output_2_matchAnnot-parsed-txt.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:30

/output/output_1_STARlong-logs-n-SJ.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:30

/scripts/STAR_commands.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:29, Last updated: 13th Nov 2019 at 23:30

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:29, Last updated: 13th Nov 2019 at 23:29

/output/output_STAR_logs-n-SJ.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:29

/scripts/02_reshape_merge_aggregate_filter.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:29, Last updated: 13th Nov 2019 at 23:29

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:29, Last updated: 13th Nov 2019 at 23:29

/scripts/01_potato_tr_evigene_IPS_commands.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:29, Last updated: 13th Nov 2019 at 23:29

/reports/IPS_PowerQuery_PivotTable.xlsx

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:29

/output/Rywal_IPS_filtered_aggregated_filtered.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28

/output/PW363_IPS_filtered_aggregated_filtered.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28

/output/Desiree_IPS_filtered_aggregated_filtered.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28

/intermediate/Rywal_IPS/all.okay.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28

/intermediate/Rywal_IPS/all.okalt.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28

/intermediate/PW363_IPS/all.okay.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28

/intermediate/PW363_IPS/all.okalt.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28

/intermediate/Desiree_IPS/all.okay.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28

/intermediate/Desiree_IPS/all.okalt.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28, Last updated: 13th Nov 2019 at 23:28

/scripts/countRywal.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28, Last updated: 13th Nov 2019 at 23:28

/scripts/countPW363.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28, Last updated: 13th Nov 2019 at 23:28

/scripts/countDesiree.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/output/Rywal_cnt_assemblies.txt

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:28, Last updated: 13th Nov 2019 at 23:28

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/output/PW363_cnt_assemblies.txt

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/output/Desiree_cnt_assemblies.txt

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/intermediate_Rywal.tar.gz

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/intermediate_PW363.tar.gz

Scales: Not specified

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Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/intermediate_Desiree.tar.gz

Scales: Not specified

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Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/scripts/00_get_tools_and_export_paths.txt

Scales: Not specified

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Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

/scripts/01_run_BUSCO.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

/output/Rywal_repAlt.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

/output/Rywal_rep.tr.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

/output/Rywal_rep.aa.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:27, Last updated: 13th Nov 2019 at 23:27

/output/Rywal_assemblies.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

/output/PW363_repAlt.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

/output/PW363_assemblies.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

/output/Desiree_repAlt.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

/output/Desiree_assemblies.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

/scripts/01_run_commands.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

/output/3cvs_tr.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26

/output/3cvs_cds.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26

/reports/SupplementaryTableS2-Primary_potato_transcriptome_assemblies.xlsx

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:26, Last updated: 13th Nov 2019 at 23:26

_p_stRT

_p_stRT/_I_STRT/_S_02_denovo/_A__S_02_denovo-files

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_02_denovo

Assays: _A__S_02_denovo-files

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:25, Last updated: 13th Nov 2019 at 23:25

/reports/SupplementaryTableS1-Input_sequences_information.xlsx

_p_stRT

_p_stRT/_I_STRT/_S_01_sequences/_A__S_01_sequences-files

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_01_sequences

Assays: _A__S_01_sequences-files

Scales: Not specified

Download

Created: 13th Nov 2019 at 23:25, Last updated: 13th Nov 2019 at 23:25

/scripts/BUSCO_plots.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_05_BUSCO-Stat-old

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:24, Last updated: 10th Nov 2019 at 00:24

/reports/BUSCO_plots.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_05_BUSCO-Stat-old

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23

/intermediate/evg_out.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_05_BUSCO-Stat-old

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

/intermediate/BUSCOall_embryophyta_odb9.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_05_BUSCO-Stat-old

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

/intermediate/BUSCO_stPanTr_embryophyta_odb9.tsv

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_05_BUSCO-Stat-old

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

/testSet/folderWithIds/IDs2

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_05_BUSCO-Stat-old

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

/testSet/my.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

/testSet/folderWithIds/IDs1

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

/scripts/print.sh

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

/scripts/MSA.py

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

/scripts/02_run_5cv.fasta_MSA.sh

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:23, Last updated: 10th Nov 2019 at 00:23

/scripts/01_merge_all_wc.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/reports/stPanTr_geneCount_paralogue-clusters.tiff

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_MAFFT_D_P_R_g_full_off_20_28/Merged.aa.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt_myLog.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt_.err.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.aligned.mview.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.aligned

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt_myLog.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt_.err.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.aligned.mview.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:22, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.aligned

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:22

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_myLog.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_.err.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.aligned.mview.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.aligned

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_myLog.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_.err.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.aligned.mview.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.aligned

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt_myLog.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt_.err.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:21, Last updated: 10th Nov 2019 at 00:21

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.aligned.mview.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.aligned

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt_myLog.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt_.err.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.aligned.mview.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt.aligned

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_myLog.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_.err.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.aligned.mview.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.aligned

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_myLog.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_.err.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.fasta

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:20, Last updated: 10th Nov 2019 at 00:20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.aligned.mview.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.aligned

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

/output/5cv_weak-components.txt

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:19

/input/selected_4_wc.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

/input/D_P_R_g.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Assays: _A_04-MSA

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

/scripts/run_BUSCO_commands.sh

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_BUSCO_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/short_summary.tar

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_BUSCO_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/BUSCO_stPanTr_embryophyta_odb9.tsv

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_BUSCO_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_03_BUSCO_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/scripts/i4.1_compress-fastas.sh

Scales: Not specified

Download

Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/scripts/i3.1_prepare-fastas-pt1.pl

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Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/scripts/i2.4_prepare-rep-component-table.pl

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Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/scripts/i2.3_parse-weak-components.pl

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Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/scripts/i2.1_prepare-network.pl

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Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

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Studies: _S_04_stPanTr

/scripts/i1.3_parse-headers.pl

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Created: 10th Nov 2019 at 00:19, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

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Studies: _S_04_stPanTr

/scripts/i1.2_parse-fasta-files-pt2.pl

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Created: 10th Nov 2019 at 00:18, Last updated: 10th Nov 2019 at 00:19

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/scripts/i1.2_parse-fasta-files-pt1.pl

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Created: 10th Nov 2019 at 00:18, Last updated: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/scripts/i1.0_copy-to-input.txt

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Created: 10th Nov 2019 at 00:18, Last updated: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/stPanTr_tr_representatives.fasta.gz

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Created: 10th Nov 2019 at 00:18, Last updated: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/stPanTr_tr_alternatives.fasta.gz

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Created: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/stPanTr_cds_representatives.fasta.gz

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Created: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/stPanTr_cds_alternatives.fasta.gz

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Created: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/stPanTr_aa_representatives.fasta.gz

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Created: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/stPanTr_aa_alternatives.fasta.gz

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Created: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/input/phureja_sequences_keep.txt.gz

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Created: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

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Created: 10th Nov 2019 at 00:18

/input/pantr_tr.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/input/pantr_cds.fasta.gz

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Created: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

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Created: 10th Nov 2019 at 00:18

/input/pantr_aa.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/input/3cvs_sequences_keep.txt.gz

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Created: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

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Created: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

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Created: 10th Nov 2019 at 00:18, Last updated: 10th Nov 2019 at 00:18

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/scripts/01_run_3cv_gffmerged_cds_commands.sh

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/retrieve/diff.tr.IDs.txt.gz

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Created: 10th Nov 2019 at 00:17, Last updated: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/retrieve/diff.cds.IDs.txt.gz

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Created: 10th Nov 2019 at 00:17, Last updated: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/retrieve/diff.aa.IDs.txt.gz

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Created: 10th Nov 2019 at 00:17, Last updated: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/okayset/3cv_gffmerged_cds.okay.fasta.gz

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Created: 10th Nov 2019 at 00:17, Last updated: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/okayset/3cv_gffmerged_cds.okay.cds.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/okayset/3cv_gffmerged_cds.okay.aa.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/okayset/3cv_gffmerged_cds.okalt.fasta.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/okayset/3cv_gffmerged_cds.okalt.cds.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/okayset/3cv_gffmerged_cds.okalt.aa.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/inputset/3cv_gffmerged_cds.cds.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/inputset/3cv_gffmerged_cds.aa.qual.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/inputset/3cv_gffmerged_cds.aa.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/dropset/3cv_gffmerged_cds.drop.fasta.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/dropset/3cv_gffmerged_cds.drop.cds.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/dropset/3cv_gffmerged_cds.drop.aa.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/3cv_gffmerged_cds.trclass.sum.txt.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/3cv_gffmerged_cds.trclass.gz

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Created: 10th Nov 2019 at 00:17, Last updated: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/3cv_gffmerged_cds.tr2aacds.log.gz

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Created: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/output/2019-08-05_3cv_gffmerged_cds_tr2ac1_log.txt.gz

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Created: 10th Nov 2019 at 00:17, Last updated: 10th Nov 2019 at 00:17

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/input/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.fasta.gz

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/input/StPGSC4.04n_PGSC-ITAG-merged_representative-transcript_genes_2019-04-23.gtf.gz

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Created: 10th Nov 2019 at 00:16

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

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Created: 10th Nov 2019 at 00:16

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_04_stPanTr

/scripts/run_BUSCO_commands.sh

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

/transfer/evg_out.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_05_BUSCO

Scales: Not specified

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_05_BUSCO

Scales: Not specified

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

/output/short_summary.tar

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_05_BUSCO

Scales: Not specified

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

/output/BUSCOall_embryophyta_odb9.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_05_BUSCO

Scales: Not specified

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

/scripts/run_TransRate_commands.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_05_BUSCO

Scales: Not specified

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_04_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_04_TransRate

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

/output/Rywal_transrate_usingReference_assemblies.csv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_04_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_04_TransRate

Scales: Not specified

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

/output/Rywal_transrate_usingReference.log

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_04_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_04_TransRate

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

/output/PW363_transrate_usingReference_assemblies.csv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_04_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_04_TransRate

Scales: Not specified

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Created: 10th Nov 2019 at 00:16, Last updated: 10th Nov 2019 at 00:16

/output/PW363_transrate_usingReference.log

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_04_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_04_TransRate

Scales: Not specified

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Created: 10th Nov 2019 at 00:15, Last updated: 10th Nov 2019 at 00:16

/output/Desiree_transrate_usingReference_assemblies.csv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_04_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_04_TransRate

Scales: Not specified

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Created: 10th Nov 2019 at 00:15, Last updated: 10th Nov 2019 at 00:15

/output/Desiree_transrate_usingReference.log

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_04_TransRate

Creator: Andrej Blejec

Contributor: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_04_TransRate

Scales: Not specified

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Created: 10th Nov 2019 at 00:15, Last updated: 10th Nov 2019 at 00:15