Testing SEEK

/output/Desiree_SRR10416849/Log.progress.out

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

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/scripts/annotate.sh

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

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_p_stRT

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

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/intermediate/trueSingle.polyploid.tr.fasta

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Studies: _S_04_stPanTr

/output/annot_stCuSTr-D_cds_all.zip

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

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_p_stRT

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:31, Last updated: 13th May 2021 at 17:31

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/intermediate/PGSC/chrNameLength.txt

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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/intermediate/trueSingle.polyploid.cds.fasta

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/output/annot_stPanTr.aa.zip

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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_p_stRT

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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/output/Desiree_SRR10416849/Log.progress.out

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Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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/intermediate/PGSC/chrName.txt

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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/intermediate/indexGFFmerged.log

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Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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/output/annot_stCuSTr-D_aa_alternatives.zip

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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/output/trueSingle.polyploid.tr_kreport.txt

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

/output/Desiree_SRR10416847/Log.final.out

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Created: 13th May 2021 at 17:29, Last updated: 13th May 2021 at 17:29

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_p_stRT

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

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/output/annot_stCuSTr-P_tr_all.zip

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

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/intermediate/gff-merged/chrName.txt

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Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

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/output/annot_stPanTr_alt.aa.zip

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Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

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/output/annot_stCuSTr-D_tr_all.zip

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

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/output/PW363_report.txt

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Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

/output/gff-merged_SRR10416847/Log.progress.out

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

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/output/stCuSTr-P_tr_representatives_transrate_usingReference/stCuSTr-P_tr_representatives/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.nin

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 17:28

Views: 510, Downloads: 16

/output/gff-merged_SRR10416849/Log.final.out

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:28

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/output/PGSC_drought123/Log.out

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Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 17:27, Last updated: 13th May 2021 at 17:28

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/output/stCuSTr-R_tr_representatives_transrate_usingReference/stCuSTr-R_tr_representatives/stCuSTr-R_tr_representatives.nsq

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:57

Views: 543, Downloads: 16

/output/gff-merged_SRR10416847/Log.out

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 11:57, Last updated: 13th May 2021 at 11:57

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/output/Desiree_drought123/Log.out

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 11:56

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/output/stCuSTr-P_tr_representatives_transrate_usingReference/stCuSTr-P_tr_representatives/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.nhr

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:56

Views: 391, Downloads: 16

/output/annot_stCuSTr-P_aa_all.zip

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_09_annotation-GFFmerged

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Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 11:56

Views: 541, Downloads: 19

/output/PGSC_SRR10416849/Log.out

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 11:56

Views: 497, Downloads: 16

/output/PGSC_drought123/Log.progress.out

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Submitter: Andrej Blejec

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Studies: _S_04_stPanTr

Assays: _A_07_Desiree-mapping

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Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 11:56

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/output/stCuSTr-R_tr_representatives_transrate_usingReference/stCuSTr-R_tr_representatives/stCuSTr-R_tr_representatives.nin

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:56

Views: 675, Downloads: 12

/output/PGSC_DM_v3.4_transcript-update_representative_transrate_usingReference/PGSC_DM_v3.4_transcript-update_representative

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:46

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/output/PGSC_DM_v3.4_transcript-update_representative_transrate_usingReference/PGSC_DM_v3.4_transcript-update_representative

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Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_06_tr_rep-transrate

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Created: 13th May 2021 at 11:43

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/bla.r - study 148

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Data file assoc with assay

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

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Created: 20th Nov 2019 at 16:29

Views: 695, Downloads: 22

/bla.r

_p_stRT

Data file assoc with assay

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 20th Nov 2019 at 16:28

Views: 720, Downloads: 24

/bla.r

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Testing of upload

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

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Created: 20th Nov 2019 at 16:22

Views: 762, Downloads: 30

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.ph

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:26, Last updated: 15th Nov 2019 at 00:26

Views: 693, Downloads: 24

/output/Rywal_rep.tr.txt

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Change license MIT-ni id

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.1_BUSCO

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Created: 15th Nov 2019 at 00:26, Last updated: 25th Nov 2019 at 15:26

Views: 716, Downloads: 26

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_myLog.txt

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:26, Last updated: 15th Nov 2019 at 00:26

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/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_038338.txt_myLog.txt

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

Views: 773, Downloads: 25

/output/PW363_tr.cds.tsv.gz

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.1_filtering

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 00:25

Views: 751, Downloads: 20

/scripts/06_archive_files.sh

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.1_filtering

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

Views: 695, Downloads: 18

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.fasta

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

Views: 713, Downloads: 20

/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt.aligned.mview.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

Views: 681, Downloads: 23

/output/5cv_weak-components.txt

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:25

Views: 700, Downloads: 24

/scripts/i1.2_parse-fasta-files-pt2.pl

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_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

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Created: 15th Nov 2019 at 00:25, Last updated: 15th Nov 2019 at 00:25

Views: 701, Downloads: 19

/output/Desiree.cds_solanumTuberosum.out.ENCHformat_top1.tsv.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

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Created: 15th Nov 2019 at 00:24

Views: 700, Downloads: 19

/scripts/01_potato_tr_evigene_IPS_commands.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

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Created: 15th Nov 2019 at 00:24, Last updated: 15th Nov 2019 at 00:24

Views: 628, Downloads: 21

/scripts/i5.3_prepare-fastas.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

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Created: 15th Nov 2019 at 00:24, Last updated: 15th Nov 2019 at 00:24

Views: 630, Downloads: 13

/scripts/03_archive_files.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

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Created: 15th Nov 2019 at 00:24, Last updated: 15th Nov 2019 at 00:24

Views: 659, Downloads: 13

/output/dropset/3cv_gffmerged_cds.drop.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

/output/Desiree.cds_SP_TrEMBL_plants.out.ENCHformat_top1.tsv.gz

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Created: 15th Nov 2019 at 00:24

Views: 636, Downloads: 15

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

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Created: 15th Nov 2019 at 00:24

Views: 764, Downloads: 15

/scripts/04_summary.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.1_filtering

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.1_filtering

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Created: 15th Nov 2019 at 00:23, Last updated: 15th Nov 2019 at 00:23

Views: 712, Downloads: 15

/scripts/i5.1_parse-cdhit-2d.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

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Created: 15th Nov 2019 at 00:23, Last updated: 15th Nov 2019 at 00:23

Views: 664, Downloads: 12

/output/PW363.tr_SwissProt_TrEMBL.out.ENCHformat_top1.tsv.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_02.8_DIAMOND

Download

Created: 15th Nov 2019 at 00:23

Views: 587, Downloads: 17

/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.ph

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_04-MSA

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Created: 15th Nov 2019 at 00:23, Last updated: 15th Nov 2019 at 00:23

Views: 613, Downloads: 19

/reports/BUSCO_plots.html

_p_stRT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_04_stPanTr

Assays: _A_05_BUSCO-Stat

Download

Created: 15th Nov 2019 at 00:23

Views: 576, Downloads: 14

/scripts/i1.3_parse-headers.pl

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

Download

Created: 15th Nov 2019 at 00:23, Last updated: 15th Nov 2019 at 00:23

Views: 661, Downloads: 17

/output/fasta_1B_alt-per-cv/stCuSTr-P_tr_alternatives.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_03.2_components

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_03.2_components

Download

Created: 15th Nov 2019 at 00:22

Views: 761, Downloads: 11

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:21

Views: 672, Downloads: 20

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:20

Views: 728, Downloads: 22

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:20

Views: 770, Downloads: 24

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:20

Views: 789, Downloads: 25

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 15th Nov 2019 at 00:20, Last updated: 15th Nov 2019 at 00:20

Views: 689, Downloads: 23

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23, Last updated: 14th Nov 2019 at 12:23

Views: 535, Downloads: 13

/scripts/01_run_commands.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23, Last updated: 14th Nov 2019 at 12:23

Views: 629, Downloads: 11

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23, Last updated: 14th Nov 2019 at 12:23

Views: 545, Downloads: 13

/output/3cvs_tr.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23

Views: 657, Downloads: 15

/output/3cvs_cds.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23

Views: 527, Downloads: 14

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23

Views: 669, Downloads: 10

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23

Views: 582, Downloads: 11

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23

Views: 580, Downloads: 12

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23

Views: 637, Downloads: 13

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23

Views: 529, Downloads: 12

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: No Investigations

Studies: No Studies

Assays: No Assays

Download

Created: 14th Nov 2019 at 12:23, Last updated: 14th Nov 2019 at 12:23

Views: 681, Downloads: 10

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17, Last updated: 14th Nov 2019 at 12:17

Views: 794, Downloads: 15

/scripts/01_run_commands.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17, Last updated: 14th Nov 2019 at 12:17

Views: 646, Downloads: 13

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17, Last updated: 14th Nov 2019 at 12:17

Views: 652, Downloads: 11

/output/3cvs_tr.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17

Views: 561, Downloads: 11

/output/3cvs_cds.fasta.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17

Views: 661, Downloads: 12

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17

Views: 703, Downloads: 15

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17

Views: 659, Downloads: 15

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17

Views: 703, Downloads: 13

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17

Views: 563, Downloads: 12

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17

Views: 708, Downloads: 10

/reports/SupplementaryTableS1-Input_sequences_information.xlsx

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 14th Nov 2019 at 12:17, Last updated: 14th Nov 2019 at 12:17

Views: 596, Downloads: 11

_p_stRT

_p_stRT/_I_STRT/_S_01_sequences/_A__S_01_sequences-files

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-3

Studies: _S_01_sequences

Assays: _A__S_01_sequences-files

Download

Created: 14th Nov 2019 at 11:28, Last updated: 14th Nov 2019 at 11:28

Views: 632, Downloads: 13

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 13th Nov 2019 at 22:34, Last updated: 13th Nov 2019 at 22:34

Views: 560, Downloads: 15

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 13th Nov 2019 at 22:34

Views: 734, Downloads: 14

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 13th Nov 2019 at 22:34

Views: 683, Downloads: 15

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 13th Nov 2019 at 22:33

Views: 572, Downloads: 12

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 13th Nov 2019 at 22:33

Views: 647, Downloads: 10

/output/PW363_initial_transrate_usingReference_assemblies.csv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_01_evigene

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_01_evigene

Download

Created: 13th Nov 2019 at 22:33, Last updated: 13th Nov 2019 at 22:33

Views: 716, Downloads: 10

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

Views: 562, Downloads: 11

/output/PW363_initial_transrate_usingReference.log

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

Views: 669, Downloads: 8

/output/Desiree_initial_transrate_usingReference_assemblies.csv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

Views: 689, Downloads: 10

/output/Desiree_initial_transrate_usingReference.log

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

Views: 672, Downloads: 8

/scripts/STARlongMatchAnnot_commands_ENCODE_denovo_param.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.6_TransRate

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.6_TransRate

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

Views: 667, Downloads: 8

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Download

Created: 13th Nov 2019 at 22:30, Last updated: 13th Nov 2019 at 22:30

Views: 666, Downloads: 8

/output/output_2_matchAnnot-parsed-txt.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Download

Created: 13th Nov 2019 at 22:30

Views: 694, Downloads: 8

/output/output_1_STARlong-logs-n-SJ.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Download

Created: 13th Nov 2019 at 22:30

Views: 660, Downloads: 10

/scripts/STAR_commands.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.5_STARlong_matchAnnot

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.5_STARlong_matchAnnot

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:30

Views: 673, Downloads: 6

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:29

Views: 567, Downloads: 10

/output/output_STAR_logs-n-SJ.tar.gz

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

Download

Created: 13th Nov 2019 at 22:29

Views: 711, Downloads: 13

/scripts/02_reshape_merge_aggregate_filter.Rmd

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.4_STAR

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:29

Views: 608, Downloads: 13

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:29

Views: 612, Downloads: 12

/scripts/01_potato_tr_evigene_IPS_commands.txt

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:29, Last updated: 13th Nov 2019 at 22:29

Views: 562, Downloads: 8

/reports/IPS_PowerQuery_PivotTable.xlsx

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:29

Views: 678, Downloads: 8

/output/Rywal_IPS_filtered_aggregated_filtered.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

Views: 607, Downloads: 13

/output/PW363_IPS_filtered_aggregated_filtered.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

Views: 514, Downloads: 13

/output/Desiree_IPS_filtered_aggregated_filtered.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

Views: 618, Downloads: 13

/intermediate/Rywal_IPS/all.okay.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

Views: 696, Downloads: 8

/intermediate/Rywal_IPS/all.okalt.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

Views: 672, Downloads: 12

/intermediate/PW363_IPS/all.okay.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

Views: 598, Downloads: 14

/intermediate/PW363_IPS/all.okalt.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

Views: 666, Downloads: 11

/intermediate/Desiree_IPS/all.okay.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

Views: 656, Downloads: 13

/intermediate/Desiree_IPS/all.okalt.aa.tsv

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28

Views: 602, Downloads: 12

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.3_InterProScan

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Assays: _A_02.3_InterProScan

Download

Created: 13th Nov 2019 at 22:28, Last updated: 13th Nov 2019 at 22:28

Views: 679, Downloads: 13

/scripts/countRywal.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Download

Created: 13th Nov 2019 at 22:28, Last updated: 13th Nov 2019 at 22:28

Views: 683, Downloads: 7

/scripts/countPW363.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

Download

Created: 13th Nov 2019 at 22:28, Last updated: 13th Nov 2019 at 22:28

Views: 650, Downloads: 11

/scripts/countDesiree.sh

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/output/Rywal_cnt_assemblies.txt

Download

Created: 13th Nov 2019 at 22:28, Last updated: 13th Nov 2019 at 22:28

Views: 617, Downloads: 10

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

Studies: _S_03_stCuSTr

/output/PW363_cnt_assemblies.txt

Download

Created: 13th Nov 2019 at 22:27, Last updated: 13th Nov 2019 at 22:27

Views: 705, Downloads: 8

_p_stRT

_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.2_assembly-contribution-count

Creator: Andrej Blejec

Submitter: Andrej Blejec

Investigations: _I_STRT-1

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/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_myLog.txt

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/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt_myLog.txt

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/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_myLog.txt

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/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt.ph

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/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_myLog.txt

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/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt.fasta

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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/input/pantr_tr.fasta.gz

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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/input/pantr_cds.fasta.gz

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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/input/3cvs_sequences_keep.txt.gz

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_02_components_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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/scripts/01_run_3cv_gffmerged_cds_commands.sh

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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/output/3cv_gffmerged_cds.trclass.sum.txt.gz

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Created: 10th Nov 2019 at 23:17

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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/input/StPGSC4.04n_seq_3_PGSC-c-rep_ITAG-cds_gff-2019-04-23.fasta.gz

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Created: 10th Nov 2019 at 23:16, Last updated: 10th Nov 2019 at 23:16

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

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/input/StPGSC4.04n_PGSC-ITAG-merged_representative-transcript_genes_2019-04-23.gtf.gz

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_p_stRT/_I_STRT/_S_04_stPanTr/_A_01_evigene_1_3cvs-gffmerged

Creator: Andrej Blejec

Submitter: Andrej Blejec

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Studies: _S_04_stPanTr