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Created: 11th Jun 2012 at 09:55
Last updated: 26th Jun 2015 at 10:27
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Version 2 (latest) Created 11th Jun 2012 at 09:55 by Quyen Yamanaka
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Projects: SysMO DB, SysMOLAB, SilicoTryp, maggy's project
Institutions: HITS gGmbH, University of Heidelberg, Somewhere Else
Expertise: Bioinformatics
Tools: Ruby on Rails
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
This Investigation was performed by SySMO DB team together with PALS in order to crete methods and best practices for capturing experimental data.
Submitter: Olga Krebs
Studies: Metabolomics data capture
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
Cell growth underlies many key cellular and developmental processes, yet a limited number of studies have been carried out on cell-growth regulation. Comprehensive studies at the transcriptional, proteomic and metabolic levels under defined controlled conditions are currently lacking.
This investigation shows public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1) Organism: Saccharomyces Cerevisiae
Submitter: Katy Wolstencroft
Studies: A time course analysis of transcription response in yeast treated with ..., Can yeast glycolysis be understood in terms of in vitro kinetics of the ..., test study
Assays: Changes in flux on the metabolome, Changes in flux on the proteome, Changes in flux on the transcriptome, Glycolysis in Saccharomyces cerevisiae, Time course analysis of transcription, Transcriptional profiling, new assay from data file, test assay, test for biol problem
Snapshots: No snapshots
Submitter: Olga Krebs
Investigation: Methods for interrelating 'omics data
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
Submitter: Quyen Yamanaka
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
Organisms: Lactic Acid Bacteria : lactic test (wild-type / wild-type)
SOPs: No SOPs
Data files: Lactis 6, Quyen data, smashies
Snapshots: No snapshots
Submitter: Quyen Yamanaka
Biological problem addressed: Metabolism
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Organisms: Bacillus subtilis, Clostridium acetobutylicum, Bacillus subtilis : 168b (del ase / dasfadsf)
Models: Kinetic model for incubation
SOPs: Quyen's sop, Validation experiments, ^K blabla
Data files: 5mM GLC runout data., Quyen data
Snapshots: No snapshots