a_proteome from BII-S-1 Version 1
Results of proteomics profile in Saccharomyces cerevisiae under different experimental conditions
SEEK ID: https://testing.sysmo-db.org/data_files/6?version=1
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a_proteome.txt
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"Sample Name" "Protocol REF" "Extract Name" "Protocol REF" "Labeled Extract Name" "Label" "Term Source REF" "Term Accession Number" "MS Assay Name" "Comment[PRIDE Accession]" "Comment[PRIDE Processed Data Accession]" "Data Transformation Name" "Derived Data File" "Factor Value[limiting nutrient]" "Term Source REF" "Term Accession Number" "Factor Value[rate]" "Unit" "Term Source REF" "Term Accession Number" "S-0.1-aliquot11" "protein extraction" "S-0.1" "ITRAQ labeling" "JC_S-0.1" "iTRAQ reagent 117" "" "" "8761" "8761" "8761" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "sulphur" "" "" "0.1" "l/hr" "" "" "C-0.1-aliquot11" "protein extraction" "C-0.1" "ITRAQ labeling" "JC_C-0.1" "iTRAQ reagent 116" "" "" "8761" "8761" "8761" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "carbon" "" "" "0.1" "l/hr" "" "" "N-0.1-aliquot11" "protein extraction" "N-0.1" "ITRAQ labeling" "JC_N-0.1" "iTRAQ reagent 115" "" "" "8761" "8761" "8761" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "nitrogen" "" "" "0.1" "l/hr" "" "" "S-0.1-aliquot11" "protein extraction" "S-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" "" "C-0.1-aliquot11" "protein extraction" "C-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" "" "N-0.1-aliquot11" "protein extraction" "N-0.1" "ITRAQ labeling" "Pool1" "iTRAQ reagent 114" "" "" "8761" "8761" "8761" "datatransformation1" "PRIDE_Exp_Complete_Ac_8761.xml" "" "" "" "" "l/hr" "" "" "C-0.2-aliquot11" "protein extraction" "C-0.2" "ITRAQ labeling" "JC_C-0.2" "iTRAQ reagent 117" "" "" "8762" "8762" "8762" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "carbon" "" "" "0.2" "l/hr" "" "" "N-0.2-aliquot11" "protein extraction" "N-0.2" "ITRAQ labeling" "JC_N-0.2" "iTRAQ reagent 116" "" "" "8762" "8762" "8762" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "nitrogen" "" "" "0.2" "l/hr" "" "" "P-0.1-aliquot11" "protein extraction" "P-0.1" "ITRAQ labeling" "JC_P-0.1" "iTRAQ reagent 115" "" "" "8762" "8762" "8762" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "phosphorus" "" "" "0.1" "l/hr" "" "" "C-0.2-aliquot11" "protein extraction" "C-0.2" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" "" "N-0.2-aliquot11" "protein extraction" "N-0.2" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" "" "P-0.1-aliquot11" "protein extraction" "P-0.1" "ITRAQ labeling" "Pool2" "iTRAQ reagent 114" "" "" "8762" "8762" "8762" "datatransformation2" "PRIDE_Exp_Complete_Ac_8762.xml" "" "" "" "" "l/hr" "" "" "P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "JC_P-0.2" "iTRAQ reagent 116" "" "" "8763" "8763" "8763" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "phosphorus" "" "" "0.2" "l/hr" "" "" "S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "JC_S-0.2" "iTRAQ reagent 115" "" "" "8763" "8763" "8763" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "sulphur" "" "" "0.2" "l/hr" "" "" "P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 117" "" "" "8763" "8763" "8763" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" "" "S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 117" "" "" "8763" "8763" "8763" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" "" "P-0.2-aliquot11" "protein extraction" "P-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 114" "" "" "8763" "8763" "8763" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" "" "S-0.2-aliquot11" "protein extraction" "S-0.2" "ITRAQ labeling" "Pool3" "iTRAQ reagent 114" "" "" "8763" "8763" "8763" "datatransformation3" "PRIDE_Exp_Complete_Ac_8763.xml" "" "" "" "" "l/hr" "" ""
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Creators and Submitter
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Created: 16th Oct 2009 at 14:00
Last updated: 5th Aug 2013 at 09:38
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Version History
Version 1 (earliest) Created 16th Oct 2009 at 14:00 by Katy Wolstencroft
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I am a Research Fellow at the University of Manchester, working in Bioinformatics and Computer Science. I am also a guest researcher at the Vrije Universiteit.My research interests include scientific workflows, semantic discovery, and applying ontology technologies to biological data
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Cell growth underlies many key cellular and developmental processes, yet a limited number of studies have been carried out on cell-growth regulation. Comprehensive studies at the transcriptional, proteomic and metabolic levels under defined controlled conditions are currently lacking.
This investigation shows public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1) Organism: Saccharomyces Cerevisiae
Submitter: Katy Wolstencroft
Studies: A time course analysis of transcription response in yeast treated with ..., Can yeast glycolysis be understood in terms of in vitro kinetics of the ..., test study
Assays: Changes in flux on the metabolome, Changes in flux on the proteome, Changes in flux on the transcriptome, Glycolysis in Saccharomyces cerevisiae, Time course analysis of transcription, Transcriptional profiling, new assay from data file, test assay, test for biol problem
Assay to measure protein expression in yeast saccharomyces cerevisiae under different nutrient limitations
Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur
This data is public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)
Submitter: Katy Wolstencroft
Assay type: Protein Expression Profiling
Technology type: Mass Spectrometry
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
