SOP for the determination of external metabolites (Glc, Pyr, Gly, Lac) in intact trophozoite incubations, and for the determination of intracellular metabolite concentrations.
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Created: 10th Jul 2015 at 14:22
Last updated: 2nd Mar 2017 at 14:18
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Version 1 (earliest) Created 10th Jul 2015 at 14:22 by Stuart Owen
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Projects: SysMO DB, <script>alert('xss-project-title')</script> & Test Project, Stuarts Project, Gatekeeper test, Xiaoming Test, testing project deletion
Institutions: School of Computer Science, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, CSIC Vigo, HITS gGmbH, Manchester Centre for Integrative Systems Biology, University of Manchester
Maybe I should buy a boat
Projects: SysMO DB, BaCell-SysMO, SulfoSys, SysMOLAB, <script>alert('xss-project-title')</script> & Test Project, Refinery NDD, Gatekeeper Testing Project, Hadas' project for Stuart, SilicoTryp, Gatekeeper test, Dummy project, Taverna Project, testing assigning organisms, Xiaoming Test, test, flora test project (2), api testing
Institutions: HITS gGmbH, DSM Nutritional Products Ltd., Manchester Centre for Integrative Systems Biology, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, School of Computer Science, University of Manchester, Universitat Autònoma de Barcelona, Helmholtz Centre for Infection Research, Department of Computer Science, ETH Zurich
https://orcid.org/0000-0003-2130-0865
Expertise: talking, walking, Data Management, Software Engineering, Software Architecture, Repositories, Microbiology, fishing, Proteomics
Tools: mouth, legs, Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, Microarray analysis, SBML
The Senior Research Software Engineer on SysMO-DB team.
Developing and testing SysMO SEEK, WorkflowHub and RightField.
search test ... Thy‐1 restricts steatosis Böät squiggle
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The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
to try and reproduce snapshot view problem
Submitter: Stuart Owen
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Snapshots: Snapshot 1, Snapshot 2, Snapshot 3, Snapshot 4, Snapshot 5
The investigation entails the construction and validation of a detailed mathematical model for glycolysis of the malaria parasite Plasmodium falciparum in the blood stage trophozoite form.
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
This Investigation was performed by SySMO DB team together with PALS in order to crete methods and best practices for capturing experimental data.
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update
Submitter: Stuart Owen
Investigation: Investigation with some private bits
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This study includes the experimental data for model validation and the model predictions of that data set.
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Biological problem addressed: Metabolism
Investigation: Glucose metabolism in Plasmodium falciparum tro...
Study: Model validation
Organisms: No organisms
Models: Kinetic model for incubation
SOPs: Validation experiments
Data files: 5mM GLC runout data.
Snapshots: No snapshots
Submitter: Quyen Yamanaka
Biological problem addressed: Metabolism
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Organisms: Bacillus subtilis, Clostridium acetobutylicum, Bacillus subtilis : 168b (del ase / dasfadsf)
Models: Kinetic model for incubation
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Data files: 5mM GLC runout data., Quyen data
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testing after java 8 update
Submitter: Stuart Owen
Assay type: Cell Growth Rate
Technology type: Bait Protein Tagging
Investigation: Investigation with some private bits
Study: Public Study for OPSK-457
Organisms: No organisms
SOPs: Validation experiments
Data files: 1 hidden item
Snapshots: Snapshot 1
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