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Created: 10th Jul 2015 at 14:24
Last updated: 10th Jul 2015 at 14:29
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Version 1 (earliest) Created 10th Jul 2015 at 14:24 by Stuart Owen
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Projects: SysMO DB, BaCell-SysMO, SulfoSys, SysMOLAB, <script>alert('xss-project-title')</script> & Test Project, Refinery NDD, Gatekeeper Testing Project, Hadas' project for Stuart, SilicoTryp, Gatekeeper test, Dummy project, Taverna Project, testing assigning organisms, Xiaoming Test, test, flora test project (2)
Institutions: HITS gGmbH, DSM Nutritional Products Ltd., Manchester Centre for Integrative Systems Biology, University of Manchester, <script>alert('xss-institution-title')</script> & Test Institution, School of Computer Science, University of Manchester, Autonomous University of Barcelona, Helmholtz Centre for Infection Research Braunscheig, ETH Zurich
https://orcid.org/0000-0003-2130-0865Expertise: talking, walking, Data Management, Software Engineering, Software Architecture, Repositories, Microbiology, fishing, Proteomics
Tools: mouth, legs, Databases, Java, Workflows, Web services, Taverna, Ruby, Ruby on Rails, linux, J2EE, Microarray analysis, SBML
The Senior Research Software Engineer on SysMO-DB team.
Developing and testing SysMO SEEK, WorkflowHub and RightField.
The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
Organisms: Lactic Acid Bacteria, Agapornis
The investigation entails the construction and validation of a detailed mathematical model for glycolysis of the malaria parasite Plasmodium falciparum in the blood stage trophozoite form.
Snapshots: Snapshot 1, Snapshot 2, Snapshot 3
This Investigation was performed by SySMO DB team together with PALS in order to crete methods and best practices for capturing experimental data.
Submitter: Olga Krebs
Studies: Metabolomics data capture
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
This study includes the experimental data for model validation and the model predictions of that data set.
Submitter: Stuart Owen
Investigation: Glucose metabolism in Plasmodium falciparum tro...
Assays: GLC incubation
Snapshots: No snapshots
Submitter: Olga Krebs
Investigation: Methods for interrelating 'omics data
Assays: Excel template for metabolomics data, GLC incubation
Snapshots: No snapshots
Submitter: Stuart Owen
Biological problem addressed: Metabolism
Investigation: Glucose metabolism in Plasmodium falciparum tro...
Study: Model validation
Organisms: No organisms
Models: Kinetic model for incubation
SOPs: Validation experiments
Data files: 5mM GLC runout data.
Snapshots: No snapshots
Submitter: Quyen Yamanaka
Biological problem addressed: Metabolism
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Organisms: Bacillus subtilis, Clostridium acetobutylicum, Bacillus subtilis : 168b (del ase / dasfadsf)
Models: Kinetic model for incubation
SOPs: Quyen's sop, Validation experiments, ^K blabla
Data files: 5mM GLC runout data., Quyen data
Snapshots: No snapshots