- Order Studies
Investigation: _I_01_LabTrials Short Name: 01_LabTrials Title: Laboratory trials Description: Selection of targets and their validation in trials performed in the laboratories and greenhouse at NIB Phenodata: ./phenodata_20210113.txt pISA Investigation creation date: 2021-01-13 pISA Investigation creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
SEEK ID: https://testing.sysmo-db.org/investigations/311
Projects: _p_Demo
Investigation position:
Export PNG
Views: 681
Created: 11th Nov 2021 at 10:39
This item has not yet been tagged.
Related items
Projects: testUpload, Test project 2019-10-30 11:13:00, Test project 2019-10-30 11:09:39, Test project 2019-11-02 19:40:30, Test project for pISA (104), _p_stRT, _p_Demo, Bla, Test project abcd, Test project 2021-07-18 22:00:39, Test project 2021-07-18 22:45:54, Test project 2021-07-18 23:08:33, Test project 2021-07-18 23:23:02, Test project 2021-07-21 00:08:04, Test project 2021-07-21 00:17:06, Test project 2021-07-21 00:18:25, Test project 2021-08-20 22:56:43, Testing of upload, _p_RNAinVAL
Institutions: National Institute of Biology, NIB, <script>alert('xss-institution-title')</script> & Test Institution
https://orcid.org/0000-0001-7484-6031Expertise: STatistics, R, Programming, Data Management
Local data management; testing uploading/downloading using API
Projects: testUpload, *, New project, New project 1, Test Project 7, Test Project, Test Project 8, Test Project 9, Test Project 10, Test Project 11, Test Project 12, Test Project 14, Test Project 13, Test Project 15, Test Project 16, Test Project 17, Test Project 18, Test: investigations 2019-10-30 11:00:08, Test: investigations 2019-10-30 11:02:00, Test project 2019-10-30 11:04:02, Test project 2019-10-30 11:08:47, Test project 2019-10-30 11:09:39, Test project 2019-10-30 11:10:03, Test project 2019-10-30 11:13:00, Test project 2019-11-01 11:41:43, Test project 2019-11-01 11:44:23, Test Project 20, Test project 21 2019-11-01 11:44:23, Test Project 21, Test project 23 2019-11-01 11:44:23, Test project 24 2019-11-01 11:44:23, Test project 33 2019-11-01 11:57:55, Test project 2019-11-01 12:01:35, Test project 40 2019-11-01 11:57:55, Test project 41 2019-11-01 11:57:55, Test project 42 2019-11-01 11:57:55, Test project 43 2019-11-01 11:57:55, Test project 44 2019-11-01 11:57:55, Test project 47 2019-11-01 11:57:55, Test project 48 2019-11-01 11:57:55, Test project 2019-11-01 19:36:07, Test project 2019-11-02 19:35:45, Test project 2019-11-02 19:40:30, Test project 50 2019-11-01 11:57:55, Test project 2019-11-02 19:47:45, Test project 51 2019-11-01 11:57:55, Test project 2019-11-02 20:22:36, Test project 2019-11-02 22:06:58, Test project 2019-11-02 22:10:04, Test project for pISA (104), _p_stRT, Test project 2019-11-13 21:46:46, Test project 2019-11-13 21:57:39, Test project 2019-11-13 21:59:51, Test project 2021-07-12 18:25:58, _p_Demo, Bla, Test project 2021-07-14 20:52:52, Test project 2021-07-14 20:54:23, Test project 2021-07-14 20:57:21, Test project 2021-07-15 23:13:46, Test project 2021-07-15 23:14:58, Test project 2021-07-15 23:16:29, Test project 2021-07-16 18:42:56, Test project 2021-07-16 18:43:56, Test project 2021-07-16 18:58:32, Test project 2021-07-16 19:00:28, Test project 2021-07-16 19:14:43, Test project 2021-07-16 19:17:03, Test project 2021-07-16 20:07:34, Test project 2021-07-17 20:31:23, Test project 2021-07-17 20:49:21, Test project abc, Test project abcd, Test project abcde, Test project 2021-07-18 21:54:46, Test project 2021-07-18 22:00:39, Test project 2021-07-18 23:08:33, Test project 2021-07-18 23:23:02, Test project 2021-07-21 00:08:04, Test project 2021-07-21 00:17:06, Test project 2021-07-21 00:18:25, Test project 2021-08-20 22:56:43, Testing of upload, _p_RNAinVAL
Web page: Not specified
This is a demo project used for the demonstration of R package seekr functionality. R package seekr is based on SEEKR-API and enables batch upload of files organized in pISA-tree structure.
Programme: pISA-tree
Public web page: https://github.com/NIB-SI/seekr
Organisms: Not specified
Study: _S_11_may2018 Short Name: 11_may2018 Title: CPB egg spraying experiment (dsMESH only) may2018 Description: Colorado potato beetle dsRNA egg spraying trial performed in May 2018 Raw Data: pISA Study creation date: 2021-05-10 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Snapshots: No snapshots
Study: _S_08_jan2017 Short Name: 08_jan2017 Title: CPB feeding experiment jan2017 Description: Colorado potato beetle dsRNA feeding trial performed in January 2017 Raw Data: pISA Study creation date: 2021-05-10 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Snapshots: No snapshots
Study: _S_02_dsRNAorder Short Name: 02_dsRNAorder Title: Ordering the production of dsRNA of selected target genes Description: In-vitro production of dsRNAs designed to silence selected CPB genes Raw Data: pISA Study creation date: 2021-01-14 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Snapshots: No snapshots
Study: _S_06_oct2016 Short Name: 06_oct2016 Title: CPB feeding experiment oct2016 Description: Colorado potato beetle dsRNA feeding trial performed in October 2016 Raw Data: pISA Study creation date: 2021-05-10 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Snapshots: No snapshots
Study: _S_07_dec2016 Short Name: 07_dec2016 Title: CPB feeding experiment dec2016 Description: Colorado potato beetle dsRNA feeding trial performed in December 2016 Raw Data: pISA Study creation date: 2021-05-10 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_01_LabTrials-test
Assays: _A_01-phenotyping, _A_02-RNAisol, _A_03-qPCR
Snapshots: No snapshots
Study: _S_01_TargetSelect Short Name: 01_TargetSelect Title: Search for genes that might be good targets for control using dsRNAs (RNAi pesticides) Description: We will examine the results of RNAi screening experiments in model organisms (e.g. Drosophila melanogaster, Tribolium castaneum) as well as employ our previous data and literature knowledge on CPB gene expression and physiology Raw Data: pISA Study creation date: 2021-01-13 pISA Study creator: Marko Petek Principal investigator: Marko ...
Submitter: Andrej Blejec
Investigation: _I_01_LabTrials-test
Assays: _A_01_LitData-dry, _A_02_UlrichTop100-BLAST, _A_03_patentDB-BLAST, _A_04_ortho-BLAST, _A_05_CPB_gene-annot, _A_08_SelTargetsA-dry
Snapshots: No snapshots
Study: _S_10_apr2018 Short Name: 10_apr2018 Title: CPB feeding experiment apr2018 Description: Colorado potato beetle dsRNA feeding trial performed in April 2018 Raw Data: pISA Study creation date: 2021-05-10 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Snapshots: No snapshots
Study: _S_05_jun2016 Short Name: 05_jun2016 Title: CPB feeding experiment jun2016 Description: Colorado potato beetle dsRNA feeding trial performed in June 2016 Raw Data: pISA Study creation date: 2021-05-10 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_01_LabTrials-test
Assays: _A_01-phenotyping, _A_02-RNAisol
Snapshots: No snapshots
Study: _S_04_Stages Short Name: 04_Stages Title: Expression of target genes in CPB developmental stages and body parts Description: Expression of target genes in CPB developmental stages and body parts Raw Data: pISA Study creation date: 2021-05-10 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_01_LabTrials-test
Assays: _A_02_qPCR_ampl_test-wet, _A_03_stages-RNAisol, _A_04_stages-qPCR
Snapshots: No snapshots
Study: _S_09_jun2017 Short Name: 09_jun2017 Title: CPB feeding experiment jun2017 Description: Colorado potato beetle dsRNA feeding trial performed in June 2017 Raw Data: pISA Study creation date: 2021-05-10 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_01_LabTrials-test
Assays: _A_00_dsRNA_stabil-wet, _A_01-phenotyping, _A_02-RNAisol, _A_03-qPCR
Snapshots: No snapshots
Study: _S_03_dsRNAprod Short Name: 03_dsRNAprod Title: Production of selected desigend dsRNAs in-vivo Description: We established the production of two selected designed dsRNAs in-vivo in bacterial cultures of E. coli TH115 (DE3), a strain that does not produce RNases and is thus suitable for production of long dsRNA Raw Data: pISA Study creation date: 2021-01-14 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: ...
Submitter: Andrej Blejec
Investigation: _I_01_LabTrials-test
Assays: _A_01_pIsol-wet, _A_02_plasmid-SangerSeq, _A_03_RNaseItreat-wet
Snapshots: No snapshots
Assay: _A_01_pIsol-wet Short Name: 01_pIsol-wet Assay Class: WET Assay Type: wet Title: Plasmid isolation from bacterial culture Description: Plasmids were obtained as bacterial culture from Addgene and isolated to be used for cloning pISA Assay creation date: 2021-01-14 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_03_dsRNAprod
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_01-phenotyping Short Name: 01-phenotyping Assay Class: WET Assay Type: phenotyping Title: Measuring feeding trial parameters Description: Weight gain, survival, photos and other phenotypic observations pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek, Valentina Levak Phenodata: ../../phenodata_20210113.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_09_jun2017
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_04_stages-qPCR Short Name: 04_stages-qPCR Assay Class: WET Assay Type: qPCR Title: qPCR of stages samples Description: qPCR of stages samples for target genes pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20210113.txt Featuredata: Data: Lab manager: Kristina Gruden Assay chemistry: mixed Assay optimisation protocol (file path, link or citation): Pippeting: liquid handling station and manual Reaction volume: 5 ul qPCR platform: HT7900 ...
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_04_Stages
Organisms: No organisms
SOPs: No SOPs
Data files: output/pPCR_RP4_JHBP_SYBR/qPCR_RNAinVAL_2017041..., output/pPCR_RP4_JHBP_SYBR/qPCR_RNAinVAL_2017041..., output/qPCR_18S/2017-04-05 18S_markop-ViiA7-exp..., output/qPCR_mesh_alas_JHBPTqMan_vATPaseE/201704..., output/qPCR_new_body_parts/20170519_SDS_export....
Snapshots: No snapshots
Assay: _A_01-phenotyping Short Name: 01-phenotyping Assay Class: WET Assay Type: phenotyping Title: Measuring feeding trial parameters Description: Weight gain, survival, photos and other phenotypic observations pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20210113.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_05_jun2016
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_02-RNAisol Short Name: 02-RNAisol Assay Class: WET Assay Type: RNAisol Title: RNA isolation and pre-qPCR sample prep Description: RNA isolation and sample preparation for qPCR pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek Lab manager: Marko Petek Phenodata: ../../phenodata_20210113.txt Featuredata: RNA ID: $_RNA Homogenisation protocol: handheld electric rotor-stator homogenization in tubes with Trizol Date Homogenisation: 2017-07-17 Isolation Protocol: ZymoRNA ...
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_09_jun2017
Organisms: No organisms
SOPs: No SOPs
Data files: output/10072017_totRNA_egfpni_jhbpni.txt
Snapshots: No snapshots
Assay: _A_05_CPB_gene-annot Short Name: 05_CPB_gene-annot Assay Class: DRY Assay Type: annot Title: CPB gene annotation using Blast2GO Description: Annotation of CPB predicted genes/proteins using Blast2GO (B2G) suite pISA Assay creation date: 2021-01-14 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_01_TargetSelect
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_01_LitData-dry Short Name: 01_LitData-dry Assay Class: DRY Assay Type: dry Title: Compiling literature data on RNAi screens in insects Description: Compiling articles and final results of insect RNAi screens in model organisms (e.g. Drosophila melanogaster, Tribolium castaneum) pISA Assay creation date: 2021-01-13 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_01_TargetSelect
Organisms: No organisms
SOPs: No SOPs
Data files: output/Schnorrer_2010_Dm/Dm_lethal phenotypes n..., output/Tenerius_2011/Terenius 2011 mmc2.xls
Snapshots: No snapshots
Assay: _A_01-phenotyping Short Name: 01-phenotyping Assay Class: WET Assay Type: phenotyping Title: Measuring feeding trial parameters Description: Weight gain, survival, photos and other phenotypic observations pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20210113.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_07_dec2016
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_08_SelTargetsA-dry Short Name: 08_SelTargetsA-dry Assay Class: DRY Assay Type: dry Title: Bioinformatics analyses for individual selected target genes Description: In depth bioinformatic analysis for each target gene using various tools to predict possible off-target effects and select a fragment sequence for dsRNA synthesis pISA Assay creation date: 2021-01-14 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_01_TargetSelect
Organisms: No organisms
SOPs: No SOPs
Data files: output/JHBP/JHBP-like_dsRNA_region_splitter.tsv
Snapshots: No snapshots
Assay: _A_02_plasmid-SangerSeq Short Name: 02_plasmid-SangerSeq Assay Class: WET Assay Type: SangerSeq Title: Sanger sequencing of Addgene plasmids Description: Sanger sequencing of Addgene plasmids pISA Assay creation date: 2021-01-14 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_03_dsRNAprod
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_01-phenotyping Short Name: 01-phenotyping Assay Class: WET Assay Type: phenotyping Title: Measuring feeding trial parameters Description: Weight gain, survival, photos and other phenotypic observations pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20210113.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_06_oct2016
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_03_RNaseItreat-wet Short Name: 03_RNaseItreat-wet Assay Class: WET Assay Type: wet Title: RNase If treatment of dsRNA Description: RNase If treatment of dsRNA produced in-vivo pISA Assay creation date: 2021-01-14 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_03_dsRNAprod
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_01_AgroRNA-wet Short Name: 01_AgroRNA-wet Assay Class: WET Assay Type: wet Title: Order dsRNA in-vitro synthesis at AgroRNA Description: Materials associated with the order of in-vitro synthesis of designed dsRNA, results of cleaning procedure and DNase I test to ensure the material is not DNA pISA Assay creation date: 2021-01-14 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_02_dsRNAorder
Organisms: No organisms
SOPs: No SOPs
Data files: output/AgroRNA dsRNA_ciscena_05-05-2016.xlsx, output/raw/AgroRNA dsRNA_ciscena_05-05-2016.txt
Snapshots: No snapshots
Assay: _A_01-phenotyping Short Name: 01-phenotyping Assay Class: WET Assay Type: phenotyping Title: Measuring feeding trial parameters (using dsRNA produced in vivo in E coli) Description: Weight gain, survival, photos and other phenotypic observations pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek, Rok Ferenc Phenodata: ../../phenodata_20210113.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_10_apr2018
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_03_stages-RNAisol Short Name: 03_stages-RNAisol Assay Class: WET Assay Type: RNAisol Title: Expression of target genes in CPB developmental stages and body parts Description: Expression of target genes in CPB developmental stages and body parts - RNA isolation pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek Lab manager: Marko Petek Phenodata: ../../phenodata_20210113.txt Featuredata: RNA ID: $_RNA Homogenisation protocol: handheld electric rotor-stator homogenization ...
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_04_Stages
Organisms: No organisms
SOPs: No SOPs
Data files: output/totRNA_DirectZol_stages_28-12-2016.xlsx
Snapshots: No snapshots
Assay: _A_03-qPCR Short Name: 03-qPCR Assay Class: WET Assay Type: qPCR Title: qPCR for target genes Description: Quantitative PCR (qPCR) for selected target genes using the established methodology at NIB. pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20210113.txt Featuredata: Data: Lab manager: Kristina Gruden Assay chemistry: mixed Assay optimisation protocol (file path, link or citation): Pippeting: liquid handling station Reaction volume: 5 ...
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_09_jun2017
Organisms: No organisms
SOPs: No SOPs
Data files: output/20170828_qPCR_results_RP4_sybr.txt
Snapshots: No snapshots
Assay: _A_01-phenotyping Short Name: 01-phenotyping Assay Class: WET Assay Type: phenotyping Title: Measuring feeding trial parameters Description: Hatching, weight gain, survival, photos and other phenotypic observations pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek Phenodata: ../../phenodata_20210113.txt Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_11_may2018
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
Assay: _A_00_dsRNA_stabil-wet Short Name: 00_dsRNA_stabil-wet Assay Class: WET Assay Type: wet Title: Stability testing of in-vitro synthetised dsRNA Description: Stability testing by gel electrophoresis before/after DNase and RNase reactions pISA Assay creation date: 2021-05-10 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_09_jun2017
Assay: _A_02_UlrichTop100-BLAST Short Name: 02_UlrichTop100-BLAST Assay Class: DRY Assay Type: BLAST Title: BLAST Ulrich top100 hits from Tribolium against CPB Description: Analysis of BLAST results from a query of top100 differentially expressed genes of Tribolium castaneum against Colorado potato beetle transcripts pISA Assay creation date: 2021-01-13 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_01_TargetSelect
Organisms: No organisms
SOPs: No SOPs
Data files: output/Tctop100cds__CPB_genome_nucl.xlsx
Snapshots: No snapshots
Assay: _A_04_ortho-BLAST Short Name: 04_ortho-BLAST Assay Class: DRY Assay Type: BLAST Title: BLAST to determine orthologs to model organisms Description: BLAST against D melanogaster and T castaneum to identify putative orthologous genes of CPB pISA Assay creation date: 2021-01-14 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials-test
Study: _S_01_TargetSelect
Organisms: No organisms
SOPs: No SOPs
Data files: No Data files
Snapshots: No snapshots
_p_RNAinVAL/_I_01_LabTrials/_S_04_Stages/_A_02_qPCR_ampl_test-wet/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_07_dec2016/_A_02-RNAisol/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_04_Stages/_A_03_stages-RNAisol/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_04_Stages/_A_04_stages-qPCR/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_01_LitData-dry/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_09_jun2017/_A_00_dsRNA_stabil-wet/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_04_Stages/_A_04_stages-qPCR/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_09_jun2017/_A_03-qPCR/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_02_dsRNAorder/_A_01_AgroRNA-wet/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_02_dsRNAorder/_A_01_AgroRNA-wet/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_04_Stages/_A_04_stages-qPCR/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_08_SelTargetsA-dry/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_04_Stages/_A_04_stages-qPCR/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_01_LitData-dry/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_09_jun2017/_A_02-RNAisol/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_04_Stages/_A_04_stages-qPCR/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_05_CPB_gene-annot/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_05_CPB_gene-annot/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_07_dec2016/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_05_CPB_gene-annot/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_05_jun2016/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_10_apr2018/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_05_CPB_gene-annot/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_05_CPB_gene-annot/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_03_dsRNAprod/_A_01_pIsol-wet/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_05_jun2016/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_10_apr2018/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_09_jun2017/_A_02-RNAisol/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_09_jun2017/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_05_jun2016/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_09_jun2017/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_07_dec2016/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_11_may2018/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_11_may2018/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_05_CPB_gene-annot/
Creator: Andrej Blejec
Submitter: Andrej Blejec
_p_RNAinVAL/_I_01_LabTrials/_S_11_may2018/_A_01-phenotyping/
Creator: Andrej Blejec
Submitter: Andrej Blejec