a_transcriptome from BII-S-1 Version 1
Results of transcriptional profile in saccharomyces cerevisiae under different experimental conditions
SEEK ID: https://testing.sysmo-db.org/data_files/4?version=1
Filename:
a_transcriptome.txt
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Size: 15.7 KB
"Sample Name" "Protocol REF" "Extract Name" "Protocol REF" "Labeled Extract Name" "Label" "Term Source REF" "Term Accession Number" "Protocol REF" "Hybridization Assay Name" "Comment[ArrayExpress Accession]" "Comment[ArrayExpress Raw Data URL]" "Comment[ArrayExpress Processed Data URL]" "Array Design REF" "Scan Name" "Array Data File" "Derived Array Data File" "Factor Value[limiting nutrient]" "Term Source REF" "Term Accession Number" "Factor Value[rate]" "Unit" "Term Source REF" "Term Accession Number" "C-0.07-aliquot1" "mRNA extraction" "C-0.07-aliquot1" "biotin labeling" "C-0.07-aliquot1" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3908" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3908" "E-MEXP-115-raw-data-331217737.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.07" "l/hr" "" "" "C-0.07-aliquot2" "mRNA extraction" "C-0.07-aliquot2" "biotin labeling" "C-0.07-aliquot2" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3909" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3909" "E-MEXP-115-raw-data-331217860.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.07" "l/hr" "" "" "C-0.07-aliquot3" "mRNA extraction" "C-0.07-aliquot3" "biotin labeling" "C-0.07-aliquot3" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3910" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3910" "E-MEXP-115-raw-data-331217979.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.07" "l/hr" "" "" "C-0.07-aliquot4" "mRNA extraction" "C-0.07-aliquot4" "biotin labeling" "C-0.07-aliquot4" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3907" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3907" "E-MEXP-115-raw-data-331217580.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.07" "l/hr" "" "" "C-0.1-aliquot1" "mRNA extraction" "C-0.1-aliquot1" "biotin labeling" "C-0.1-aliquot1" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3912" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3912" "E-MEXP-115-raw-data-331218271.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.1" "l/hr" "" "" "C-0.1-aliquot2" "mRNA extraction" "C-0.1-aliquot2" "biotin labeling" "C-0.1-aliquot2" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3913" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3913" "E-MEXP-115-raw-data-331218449.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.1" "l/hr" "" "" "C-0.1-aliquot3" "mRNA extraction" "C-0.1-aliquot3" "biotin labeling" "C-0.1-aliquot3" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3914" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3914" "E-MEXP-115-raw-data-331218681.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.1" "l/hr" "" "" "C-0.1-aliquot4" "mRNA extraction" "C-0.1-aliquot4" "biotin labeling" "C-0.1-aliquot4" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3911" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3911" "E-MEXP-115-raw-data-331218116.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.1" "l/hr" "" "" "C-0.2-aliquot1" "mRNA extraction" "C-0.2-aliquot1" "biotin labeling" "C-0.2-aliquot1" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3916" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3916" "E-MEXP-115-raw-data-331219013.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.2" "l/hr" "" "" "C-0.2-aliquot2" "mRNA extraction" "C-0.2-aliquot2" "biotin labeling" "C-0.2-aliquot2" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3915" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3915" "E-MEXP-115-raw-data-331218842.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.2" "l/hr" "" "" "C-0.2-aliquot3" "mRNA extraction" "C-0.2-aliquot3" "biotin labeling" "C-0.2-aliquot3" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3918" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3918" "E-MEXP-115-raw-data-331219245.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.2" "l/hr" "" "" "C-0.2-aliquot4" "mRNA extraction" "C-0.2-aliquot4" "biotin labeling" "C-0.2-aliquot4" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3917" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3917" "E-MEXP-115-raw-data-331219131.txt" "E-MEXP-115-processed-data-1341986893.txt" "carbon" "" "" "0.2" "l/hr" "" "" "N-0.07-aliquot1" "mRNA extraction" "N-0.07-aliquot1" "biotin labeling" "N-0.07-aliquot1" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3919" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3919" "E-MEXP-115-raw-data-331219361.txt" "E-MEXP-115-processed-data-1341986893.txt" "nitrogen" "" "" "0.07" "l/hr" "" "" "N-0.07-aliquot2" "mRNA extraction" "N-0.07-aliquot2" "biotin labeling" "N-0.07-aliquot2" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3921" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3921" "E-MEXP-115-raw-data-331219634.txt" 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"E-MEXP-115-processed-data-1341986893.txt" "nitrogen" "" "" "0.2" "l/hr" "" "" "N-0.2-aliquot4" "mRNA extraction" "N-0.2-aliquot4" "biotin labeling" "N-0.2-aliquot4" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3927" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3927" "E-MEXP-115-raw-data-331220607.txt" "E-MEXP-115-processed-data-1341986893.txt" "nitrogen" "" "" "0.2" "l/hr" "" "" "P-0.07-aliquot1" "mRNA extraction" "P-0.07-aliquot1" "biotin labeling" "P-0.07-aliquot1" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3932" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3932" "E-MEXP-115-raw-data-331221518.txt" "E-MEXP-115-processed-data-1341986893.txt" "phosphorus" "" "" "0.07" "l/hr" "" "" "P-0.07-aliquot2" "mRNA extraction" "P-0.07-aliquot2" "biotin labeling" "P-0.07-aliquot2" "biotin" "CHEBI" "15956" "EukGE-WS4" "HYB:MEXP:3934" "E-MEXP-115" "E-MEXP-115" "E-MEXP-115" "A-AFFY-27" "SCAN:MEXP:3934" "E-MEXP-115-raw-data-331221873.txt" 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Created: 16th Oct 2009 at 13:25
Last updated: 16th Apr 2013 at 10:09
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Version 1 (earliest) Created 16th Oct 2009 at 13:25 by Katy Wolstencroft
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I am a Research Fellow at the University of Manchester, working in Bioinformatics and Computer Science. I am also a guest researcher at the Vrije Universiteit.My research interests include scientific workflows, semantic discovery, and applying ontology technologies to biological data
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The main objectives of SysMO-DB are to: facilitate the web-based exchange of data between research groups within- and inter- consortia, and to provide an integrated platform for the dissemination of the results of the SysMO projects to the scientific community. We aim to devise a progressive and scalable solution to the data management needs of the SysMO initiative, that:
- maximises the ‘shelf life’ and utility of data generated by SysMO;
- provides an integrated platform for the dissemination ...
Programme: Dummy programme
Public web page: http://www.sysmo-db.org/
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No description specified
Submitter: Stuart Owen
Assays: Test Assay for Publishing, Testing assay for project browser thingy, demo modelling analysis, ttt
This Investigation was performed by SySMO DB team together with PALS in order to crete methods and best practices for capturing experimental data.
Submitter: Olga Krebs
Studies: Metabolomics data capture
Assays: Excel template for metabolomics data, GLC incubation
Cell growth underlies many key cellular and developmental processes, yet a limited number of studies have been carried out on cell-growth regulation. Comprehensive studies at the transcriptional, proteomic and metabolic levels under defined controlled conditions are currently lacking.
This investigation shows public data taken from the BioInvestigation Index. (http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1) Organism: Saccharomyces Cerevisiae
Submitter: Katy Wolstencroft
Studies: A time course analysis of transcription response in yeast treated with ..., Can yeast glycolysis be understood in terms of in vitro kinetics of the ..., test study
Assays: Changes in flux on the metabolome, Changes in flux on the proteome, Changes in flux on the transcriptome, Glycolysis in Saccharomyces cerevisiae, Time course analysis of transcription, Transcriptional profiling, new assay from data file, test assay, test for biol problem
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No description specified
Submitter: Olga Krebs
Investigation: Methods for interrelating 'omics data
Assays: Excel template for metabolomics data, GLC incubation
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Dear SEEK users, this Assay is just an example Excell sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat
.
Submitter: Olga Krebs
Assay type: Amplification
Technology type: Mass Spectrometry
Investigation: Methods for interrelating 'omics data
Study: Metabolomics data capture
Assay to measure gene expression of yeast saccharomyces cerevisiae under different nutrient limitations
Limiting Nutrients: ethanol, nitrogen, glucose, phosphorus, carbon, sulfur, sulphur
This data is public data taken from the BioInvestigation Index.
(http://www.ebi.ac.uk/bioinvindex/study.seam?studyId=BII-S-1)
Submitter: Katy Wolstencroft
Assay type: Transcriptional Profiling
Technology type: Microarray
Investigation: Growth control of the eukaryote cell: a systems...
Study: 1 hidden item
1 hidden item
