_I_EnViRoS | 2021-11-07 17:07:06

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Investigation: _I_EnViRoS Short Name: EnViRoS Title: Integration of data from different platforms Description: * Phenodata: ./phenodata_20201113.txt pISA Investigation creation date: 2020-11-13 pISA Investigation creator: AB Principal investigator: * License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes

SEEK ID: https://testing.sysmo-db.org/investigations/285

Projects: _p_Demo

Investigation position:

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Creators and Submitter

Creator

Andrej Blejec

Submitter

Andrej Blejec

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Views: 290

Created: 7th Nov 2021 at 16:08

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People (1)
Programmes (1)
Projects (1)
Studies (2)
Assays (4)
Data files (34)
Documents (16)

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Andrej Blejec

Institutions: National Institute of Biology, NIB, <script>alert('xss-institution-title')</script> & Test Institution

https://orcid.org/0000-0001-7484-6031

Expertise: STatistics, R, Programming, Data Management

Tools: R, API

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pISA-tree

Local data management; testing uploading/downloading using API

Web page: Not specified

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_p_Demo

This is a demo project used for the demonstration of R package seekr functionality. R package seekr is based on SEEKR-API and enables batch upload of files organized in pISA-tree structure.

Programme: pISA-tree

Public web page: https://github.com/NIB-SI/seekr

Organisms: Not specified

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_S_01_Integ

_p_Demo

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Andrej Blejec

Study: _S_01_Integ Short Name: 01_Integ Title: * Description: * Raw Data: pISA Study creation date: 2020-11-13 pISA Study creator: AB Principal investigator: * License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes

Submitter: Andrej Blejec

Investigation: _I_EnViRoS | 2021-11-07 17:07:06

Assays: _A_01_Desc-R, _A_02_Upload-R, _S_01_Integ-files

Snapshots: No snapshots

Created: 7th Nov 2021 at 16:08

Investigation files

_p_Demo

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Andrej Blejec

Investigation files _I_EnViRoS

Submitter: Andrej Blejec

Investigation: _I_EnViRoS | 2021-11-07 17:07:06

Assays: _I_EnViRoS-files

Snapshots: No snapshots

Created: 7th Nov 2021 at 16:08

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_I_EnViRoS-files

_p_Demo

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Andrej Blejec

Files connected to investigation: _I_EnViRoS

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_EnViRoS | 2021-11-07 17:07:06

Study: Investigation files

Organisms: No organisms

SOPs: No SOPs

Data files: Bin_selection.txt, Bin_selection_2.txt, Featuredata_metabolites_210127.txt, Phenodata.xlsx, Phenodata_20201109.txt, Phenodata_20201109.xlsx, Transcripts 2018.xlsx, Transcripts 2019.xlsx, Transcripts1819-02.txt, Transcripts1819-unique.txt, Transcripts1819.txt, _INVESTIGATION_METADATA.TXT, seekignore.txt

Snapshots: No snapshots

Created: 7th Nov 2021 at 16:08, Last updated: 7th Nov 2021 at 16:08

_S_01_Integ-files

_p_Demo

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Andrej Blejec

Files connected to study: _S_01_Integ

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_EnViRoS | 2021-11-07 17:07:06

Study: _S_01_Integ

Organisms: No organisms

SOPs: No SOPs

Data files: Stem water potential 2018 2019.xlsx, _STUDY_METADATA.TXT

Snapshots: No snapshots

Created: 7th Nov 2021 at 16:08, Last updated: 7th Nov 2021 at 16:09

_A_01_Desc-R

_p_Demo

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Andrej Blejec

Assay: _A_01_Desc-R Short Name: 01_Desc-R Assay Class: DRY Assay Type: R Title: Data overview and descriptive statistical presentation Description: First we will organize the data and perfom preliminary data analyses to overview what we have. pISA Assay creation date: 2020-11-13 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Phenodata: Phenodata_20201109.txt Featuredata: Transcripts1819-02.txt Featuredata metabolites: Featuredata_metabolites_210127.txt Transcript data 18: /input/Transcripts ...

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_EnViRoS | 2021-11-07 17:07:06

Study: _S_01_Integ

Organisms: No organisms

SOPs: No SOPs

Data files: Definicije tipov - še en poskus.xlsx, Definicije tipov.xlsx, _Assay_METADATA.TXT, input/Featuredata-metabolites.txt, input/Metabolites 2018 2019.xlsx, input/Metabolites_2018-Nor2W_ISTD.txt, input/Metabolites_2018_2019-Nor2W_ISTD.xlsx, input/Metabolites_2018_raw_data.txt, input/Metabolites_2019-Nor2W_ISTD.txt, input/Metabolites_2019_raw_data.txt, input/Phenodata.xlsx, input/Stem water potential 2018 2019.txt, input/Stem water potential 2018 2019.xlsx, input/Transcripts 2018.txt, input/Transcripts 2018.xlsx, input/Transcripts 2019.txt, input/Transcripts 2019.xlsx, output/topTable18.txt

Snapshots: No snapshots

Created: 7th Nov 2021 at 16:09, Last updated: 7th Nov 2021 at 16:11

_A_02_Upload-R

_p_Demo

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Andrej Blejec

Assay: _A_02_Upload-R Short Name: 02_Upload-R Assay Class: DRY Assay Type: R Title: Test upload to FH Description: * pISA Assay creation date: 2021-10-21 pISA Assay creator: Andrej Blejec Analyst: * Phenodata: ../../Phenodata_20201109.xlsx Featuredata: Data:

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_EnViRoS | 2021-11-07 17:07:06

Study: _S_01_Integ

Organisms: No organisms

SOPs: No SOPs

Data files: _Assay_METADATA.TXT

Snapshots: No snapshots

Created: 7th Nov 2021 at 16:09, Last updated: 7th Nov 2021 at 16:09

Showing 20 out of a possible 34 Data files Advanced Data files list for this Investigation with search and filtering

output/topTable18.txt

_p_Demo

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Andrej Blejec

_p_VinskaTrta/_I_EnViRoS/_S_01_Integ/_A_01_Desc-R/