output/topTable18.txt Version 1
_p_VinskaTrta/_I_EnViRoS/_S_01_Integ/_A_01_Desc-R/
SEEK ID: https://testing.sysmo-db.org/data_files/1639?version=1
Filename:
output/topTable18.txt
Format: Plain text document
Size: 3.98 MB
"" "varietyF" "day34" "day67" "treatWS" "varietyF.day34" "varietyF.day67" "varietyF.treatWS" "day34.treatWS" "day67.treatWS" "varietyF.day34.treatWS" "varietyF.day67.treatWS" "AveExpr" "F" "P.Value" "adj.P.Val" "Vitvi07g02615" -8.39243330575 0.38536708 0.8941490425 0.0458472687500047 -0.23970468 -0.849862602 -0.0259205980000046 0.0344655919999953 -0.163691031000005 -0.024656247999995 0.039597924250005 -1.7533383840625 3671.79225597362 7.41278396208032e-55 1.12985653150028e-50 "Vitvi19g00049" -8.28258174475 0.12427415675 -0.0434328829999999 -0.0370619909999959 0.0213882432499998 0.0877193234999996 0.0569886617499961 -0.185134844250004 -0.330076268250004 0.194944188250004 0.205983161500004 -2.06093609375 2426.99308096067 2.22353036499551e-51 1.69455249116308e-47 "Vitvi19g01601" -7.640520715 -0.17009254475 0.6937454415 0.313090881250003 0.315754944749999 -0.649459001 -0.293164210500003 0.0846792549999969 -0.781673399000003 -0.0748699109999969 0.657580292250003 -2.23577503935417 2368.74423837905 3.55623653943011e-51 1.80680524446646e-47 "Vitvi10g00361" 8.00616241675 0.0362456935000002 -0.15569508075 0.111266753499997 -0.4274758995 -0.21815032275 -0.319375172249997 -0.025322722999997 0.0852296535000028 0.220076448249997 0.332922107999997 -2.18776495504167 1448.39277546186 4.76872706310923e-47 1.81712344739777e-43 "Vitvi12g00921" 7.66676202525 0.0362456935000002 -0.15569508075 0.111266753499996 -0.00968806375000014 0.104111487 -0.564742453999995 -0.0253227229999958 0.0852296535000042 0.139011882749996 0.361104701499996 -2.29987219464583 1398.67299496996 9.36042080665201e-47 2.8534306786998e-43 "Vitvi11g00990" -7.36579751325 -0.429312096 0.92460236425 0.00957175525000467 0.574974495999999 -0.880315923750001 0.0103549154999952 0.282957479499995 0.764620130499995 -0.273148135499994 -0.888713237249995 -2.30836254697917 1288.02508289064 4.5941885193852e-46 1.16707702354115e-42 "Vitvi00g00950" -6.8625566645 0.255716555500001 0.224347543750001 0.103865973750005 -0.110054155500001 -0.180061103250001 -0.0839393030000045 -0.0143072335000048 -0.799586237500005 0.0241165775000052 0.675493130750005 -2.69406970164583 1221.46584896782 1.27915472235874e-45 2.78526803974171e-42 "Vitvi02g00516" -6.4529958235 0.3124565075 0.2357955055 0.291196029750003 -0.1667941075 -0.191509065000001 -0.271269359000003 -0.469281783250003 0.359891837999997 0.479091127250003 -0.483984944749996 -2.78194432870833 1072.44976189655 1.57419864068983e-44 2.9992419601743e-41 "Vitvi09g01029" 9.061492956 0.0362456934999999 -0.15569508075 0.111266753499994 -0.21105147825 -0.454855665999999 -0.188215522749994 -0.025322722999994 0.481470278750006 -0.0368066782500062 -0.544008704000006 -1.659134317375 1019.27659300637 4.19751717110777e-44 7.1087285246694e-41 "Vitvi02g01540" -8.6016663075 -0.415087068 -0.58396590125 -0.0327518869999944 0.956990093249999 0.628252341749999 0.0526785577499947 0.176000056749995 -0.520953919750006 -0.562431337999994 0.396860813000006 -2.03309050397917 835.334647707233 1.9453769778575e-42 2.9651435896504e-39 "Vitvi12g02445" 7.497570551 0.43248631875 -0.15569508075 0.111266753499998 0.60956381025 -0.10606902625 -0.113007176999998 -0.421563348249998 0.0852296535000015 0.397912607999999 -0.0959372387500015 -2.15382721610417 741.830884811547 1.91413930120575e-41 2.65230102081619e-38 "Vitvi07g01569" -7.628124442 0.0307100285000003 0.3098758855 0.0915594732500052 -0.28128825375 -0.66183007025 -0.467873427750005 -0.159011146250005 0.730503821749995 0.565061115500006 -0.458356303249994 -1.99101959195833 734.689257285644 2.30600834641615e-41 2.92901493467292e-38 "Vitvi15g00870" -5.744263517 0.241102689500001 0.562036533000002 -0.146878455249988 6.50791014575 5.85547634975 0.019300586999988 0.243898097749988 -0.676189410250012 -0.361944551999989 0.531604611000012 9.041797293625 724.479572371012 3.01901691098548e-41 3.51800029516189e-38 "Vitvi09g01181" 7.0309706495 0.0362456935000002 -0.15569508075 0.111266753499995 0.10301358475 0.945193791999999 -0.462463586499995 -0.0253227229999947 0.0852296535000053 0.759677894749995 -0.193589613500005 -2.42773653197917 721.926363802574 3.23133474165244e-41 3.51800029516189e-38 "Vitvi12g00330" 5.80942082725 0.0362456935000002 -0.15569508075 0.111266753499996 0.885276092 0.774817762999999 -0.295308030499996 -0.0253227229999961 0.0852296535000038 0.0235249972499961 0.0568303137499961 -2.93521922191667 704.442408475031 5.18009488932749e-41 5.26366708687531e-38 "Vitvi10g01708" 6.410297108 0.0362456935000002 -0.15569508075 0.111266753499998 -0.364463747 0.17614282125 0.0825818987500022 -0.025322722999998 0.0852296535000019 -0.169088497500002 -0.438984498500002 -2.9057467549375 692.917454337052 7.11578486039572e-41 6.77867455263447e-38 "Vitvi07g02459" -8.1566399255 -1.09207339325 -1.94178094625 0.0589609655000044 1.23773579325 1.98606738675 -0.0390342947500039 -0.186330496500003 -2.051239357 0.196139840500003 1.92714625025 -2.762547094875 657.155445887837 1.97271541090174e-40 1.7687134289979e-37 "Vitvi16g02108" 9.09689219275 -0.756235556750001 -0.948176331 -0.681214496750009 0.943168181750002 0.542680137000002 0.253815332250009 0.767158527250009 1.27395152900001 -0.461261282750009 -1.82310944550001 -1.182183811875 604.378355043995 9.87192784550189e-40 8.35932912339666e-37 "Vitvi16g01158" -6.65495781675 1.311864098 1.88874727975 0.273886952250002 -1.166201698 -1.84446083925 -0.253960281500002 -0.727442431500002 -0.409475275000002 0.737251775500002 0.285382168250001 -2.32885802077083 554.556477157548 5.15960605378269e-39 4.13909028798715e-36 "Vitvi19g00048" -8.4346269005 0.0203313969999997 -0.29483303375 -0.0360389754999948 -0.270909622249999 0.33911947425 -0.340274979000005 -0.220470552750005 -0.172470177500005 0.626520522000004 0.048377070750005 -1.7695319650625 532.967580035493 1.10649885849394e-38 8.4326278005823e-36 "Vitvi00g02165" -6.5081481885 0.3355229425 0.436875412999999 -0.0204220582499991 -0.1898605425 0.00365165275000046 0.0403487289999993 -0.116949558500001 -0.0457024765000008 0.126758902500001 -0.474631255499999 -2.76633339983333 531.103735082934 1.18352623082983e-38 8.59014610014681e-36 "Vitvi01g00501" 8.58697497525 0.432486318750001 -0.155695080749999 0.507507378749998 -1.23805074475 0.131410235499999 -0.209620782499998 -0.817803973499998 -0.311010971749997 0.548263501499998 -0.0986161460000024 -1.8232881845 527.657435800365 1.3411835780999e-38 9.29196368063579e-36 "Vitvi19g01991" -11.8902277735 -0.58781135675 -0.0842517790000003 -0.26002407874999 1.12971438175 -0.26770240575 0.27995074949999 0.32222932374999 -0.50130732425001 -1.10490122999999 0.377214217500011 -0.0801260558749999 522.874596219585 1.59752260582619e-38 1.05867128513056e-35 "Vitvi12g02277" 6.5346044805 0.0362456934999999 -0.15569508075 0.111266753499992 0.89675156175 0.8280321875 0.843607505500008 -0.0253227229999921 0.0852296535000078 -0.611297539750008 -0.860402507750008 -2.40645480879167 515.284757135958 2.11549141418611e-38 1.34351333895936e-35 "Vitvi15g00172" 8.16671080825 -0.359994931750001 -0.551935706000001 0.111266753499994 1.03006655025 1.177058805 0.194131857000005 -0.0253227229999949 0.481470278750005 -0.178899007750004 -0.994733778000005 -1.44942103827083 496.761266279481 4.27283953528073e-38 2.60506480786995e-35 "Vitvi19g01988" -10.65763237225 -0.28568836625 0.332844777 0.118972688000006 0.431350766249999 -0.68479896175 0.481436006249994 -0.150086179000006 -0.840851745000006 -0.420586500749993 0.136276614750006 -0.5010861320625 465.75995360198 1.4718481801538e-37 8.40721223757893e-35 "Vitvi04g00432" 5.6122474235 0.00409200450000059 0.621351908500001 0.562275394499999 1.20584545125 0.244855118499998 -0.859917842249999 0.549593136750002 -0.590101780999999 -0.450829494750003 0.938030723749999 1.39570236402083 465.474390343985 1.48927129257729e-37 8.40721223757893e-35 "Vitvi04g00710" -7.355731159 -0.869727241 -1.80290916775 0.175201925000002 0.61914901575 1.450954983 -0.551515879500002 -0.0379100320000024 0.379475857499998 0.443960001250002 -0.107328338999997 -2.6276699118125 442.809712427083 3.88014044321792e-37 2.11218216555456e-34 "Vitvi16g01449" 8.6441762645 0.0362456935000004 -0.15569508075 0.111266753499996 -0.0928057415000004 -0.1401761675 -0.161381508499995 0.370917902250004 0.665711677250004 -0.526488592750004 -0.589736462500005 -1.73680042247917 433.824437609193 5.7488845462467e-37 3.02153442254801e-34 "Vitvi12g00573" 6.80375147425 -0.756235556750001 -0.948176331000001 -0.681214496750006 1.16417283275 1.3690390015 0.422182572250006 0.767158527250005 0.877710903750005 -0.349813945500006 0.256935471749994 -1.995517524875 432.743002040621 6.03070989616848e-37 3.06400267458e-34 "Vitvi12g02454" -7.93203279425 -1.39117711125 -1.8843980745 -0.0701212567499967 1.140598886 1.53244388975 -0.306192697750003 0.290817157999997 -0.546941006500003 0.115232811250003 0.819088525000003 -2.551147158625 424.483943472705 8.72613864875161e-37 4.29044533175071e-34 "Vitvi12g02318" -5.59661106875 1.7223800705 2.737707694 0.17788635325 -3.5301629685 -4.6468665515 -0.342201081500001 -0.350410478 -0.10752339575 0.544461221000001 0.167671688 -1.32859341191667 417.990986403696 1.17259941696338e-36 5.58523759792372e-34 "Vitvi13g02316" -3.3677493555 0.274862548500001 0.38344967975 -0.0294030424999958 3.898189238 3.3749332245 -0.168512461250004 0.143060795499996 -0.263292127000004 -0.130552811749996 0.445227709000004 6.77303908279167 390.030791410013 4.41861231352358e-36 2.03435175337322e-33 "Vitvi07g03003" -9.871972052 -1.1631651645 -1.60472079875 0.032228966000007 1.3088275645 2.0452478645 0.383938329999994 -0.140946705500007 -1.91550472250001 -0.245484575749994 0.998930365250007 -1.78610266245833 389.488345624174 4.53798449118812e-36 2.03435175337322e-33 "Vitvi07g02980" 7.85933974025 0.0362456934999999 0.424786943 0.111266753499995 -0.45556263575 -0.605579883750001 -0.326852203249995 -0.0253227229999945 -0.495252370249995 0.0731108944999947 0.472424561499995 -2.2361731883125 382.407983160277 6.44844608471335e-36 2.80820614923431e-33 "Vitvi07g01975" -10.543971629 -0.3937678855 -1.197352597 -0.261601368499995 0.845028390749999 0.84539841225 0.677768664499995 -0.193372102500005 -1.515864738 -0.894897909249994 0.995531006000005 -1.00887140289583 371.449495120723 1.12518434375541e-35 4.74649388864079e-33 "Vitvi14g01657" 10.56766260625 0.0362456937499989 -0.155695080750001 0.111266753749991 0.0532836835000016 -0.0567416929999986 -0.31853907874999 -0.42156334849999 0.269471052000009 0.417203781999989 -0.0870780805000103 -0.457443118645833 370.989191286277 1.15221279280743e-35 4.74649388864079e-33 "Vitvi09g02014" -5.81523377925 0.611989902250001 0.382643837750001 0.267076275250007 5.7356479185 5.62650039525 -0.0454808135000071 0.294117707249994 -0.394429024750007 -0.304074150749993 0.327290938500007 7.06429450414583 367.305437959141 1.39473855395068e-35 5.59436974718851e-33 "Vitvi12g02574" -8.26414422825 -0.19271575075 -0.24174975425 0.0816998772500037 0.734618776 0.682276819999999 -0.0617732065000032 -0.261646006000004 -0.763108821250003 0.271455349750003 0.242775089250003 -2.069750668 365.560827947697 1.52781140628069e-35 5.97100037295648e-33 "Vitvi03g00080" -3.07946052425 0.5891002645 0.729854188 0.074402847500002 3.23530234375 3.150570876 -0.154003282500002 -0.129066752500002 -0.146583229500003 0.333798459500002 0.399888114000002 5.72405507283333 347.521033884904 4.02357898724964e-35 1.53318477309148e-32 "Vitvi12g01952" 7.70912516775 0.0362456934999998 -0.15569508075 0.111266753499998 -1.35422308775 0.44779085575 -0.785167581249998 -0.0253227229999981 0.0852296535000019 1.9855313905 0.185774850749997 -2.36134037633333 340.031699042553 6.10344520813174e-35 2.26899297225229e-32 "Vitvi14g02021" -4.7774092505 -0.0911103619999997 -0.112267180000001 -0.104625339499995 5.16586211975 4.84245877625 0.914509497749995 0.240312154249994 0.130723947249995 -1.07682985749999 -0.898980308499995 6.0596826999375 330.706360069151 1.03868253866989e-34 3.76942839390631e-32 "Vitvi01g01006" 9.38019925275 0.0362456934999997 -0.155695080750001 0.11126675349999 -0.461250805999999 0.348349396250001 -0.05141619499999 -0.0253227229999902 0.78706838400001 -0.0442490780000096 -1.70650583375001 -1.41997565789583 330.109220431638 1.07519445871715e-34 3.81118928831787e-32 "Vitvi02g00160" -5.00258684925 0.1183835725 0.46595967875 -0.115294851749998 4.68050264325 4.5647678055 0.612086167249998 0.224147823499998 -0.142664864750001 -0.628847406499998 -0.155688323749998 7.61353550079167 320.621139550182 1.87739173155515e-34 6.50345563008262e-32 "Vitvi10g01743" 8.80420004475 0.0362456935000003 0.424786943 0.111266753499993 -0.33038204725 0.960117625 -0.128878141749993 0.370917902250007 0.0852296535000071 -0.111221759750007 0.0274973909999926 -1.32208771504167 316.407917482519 2.41724764354043e-34 8.18748635174294e-32 "Vitvi10g00184" 7.37605350775 0.0362456935000005 0.24054554425 0.111266753499996 0.511404781999999 0.651882648999999 -0.178876912999996 0.555159300750004 0.0852296537500041 -0.569768999750004 0.155795811499996 -2.01796300222917 302.722425649121 5.62451596545582e-34 1.86367113794516e-31 "Vitvi12g02492" -8.026142154 -1.036182608 -1.2621211625 -0.639053144249997 1.181845008 1.70264822825 0.658979814999997 0.899054726999997 -0.950132545000003 -0.889245382999996 0.429798813000003 -2.66448002483333 292.522557886772 1.08200699220088e-33 3.50892565428209e-31 "Vitvi10g01694" 7.33002312875 -0.359994931749999 -0.551935705999999 0.295508151999999 0.914394655749999 0.397641261249999 -0.709315382749998 -0.209564121499999 -0.0990117449999991 0.733058384249999 -0.359207482750001 -2.14918449152083 291.528468581031 1.15463172325525e-33 3.64492968647125e-31 "Vitvi09g00260" 7.1778517185 0.0362456934999999 -0.15569508075 0.111266753499995 -0.18628435925 1.13423101575 -0.833427592499995 -0.0253227229999953 0.0852296535000048 0.855738958499995 -1.5816935685 -2.57141735995833 291.303437906292 1.17177243561928e-33 3.64492968647125e-31 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Created: 7th Nov 2021 at 16:10
Last updated: 7th Nov 2021 at 16:10
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Version 1 (earliest) Created 7th Nov 2021 at 16:10 by Andrej Blejec
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https://orcid.org/0000-0001-7484-6031
Projects: testUpload, Test project 2019-10-30 11:13:00, Test project 2019-10-30 11:09:39, Test project 2019-11-02 19:40:30, Test project for pISA (104), _p_stRT, _p_Demo, Bla, Test project abcd, Test project 2021-07-18 22:00:39, Test project 2021-07-18 22:45:54, Test project 2021-07-18 23:08:33, Test project 2021-07-18 23:23:02, Test project 2021-07-21 00:08:04, Test project 2021-07-21 00:17:06, Test project 2021-07-21 00:18:25, Test project 2021-08-20 22:56:43, Testing of upload, _p_RNAinVAL
Institutions: National Institute of Biology, NIB, <script>alert('xss-institution-title')</script> & Test Institution
https://orcid.org/0000-0001-7484-6031
Advanced Programmes list for this Data file with search and filtering
Local data management; testing uploading/downloading using API
Projects: testUpload, *, New project, New project 1, Test Project 7, Test Project, Test Project 8, Test Project 9, Test Project 10, Test Project 11, Test Project 12, Test Project 14, Test Project 13, Test Project 15, Test Project 16, Test Project 17, Test Project 18, Test: investigations 2019-10-30 11:00:08, Test: investigations 2019-10-30 11:02:00, Test project 2019-10-30 11:04:02, Test project 2019-10-30 11:08:47, Test project 2019-10-30 11:09:39, Test project 2019-10-30 11:10:03, Test project 2019-10-30 11:13:00, Test project 2019-11-01 11:41:43, Test project 2019-11-01 11:44:23, Test Project 20, Test project 21 2019-11-01 11:44:23, Test Project 21, Test project 23 2019-11-01 11:44:23, Test project 24 2019-11-01 11:44:23, Test project 33 2019-11-01 11:57:55, Test project 2019-11-01 12:01:35, Test project 40 2019-11-01 11:57:55, Test project 41 2019-11-01 11:57:55, Test project 42 2019-11-01 11:57:55, Test project 43 2019-11-01 11:57:55, Test project 44 2019-11-01 11:57:55, Test project 47 2019-11-01 11:57:55, Test project 48 2019-11-01 11:57:55, Test project 2019-11-01 19:36:07, Test project 2019-11-02 19:35:45, Test project 2019-11-02 19:40:30, Test project 50 2019-11-01 11:57:55, Test project 2019-11-02 19:47:45, Test project 51 2019-11-01 11:57:55, Test project 2019-11-02 20:22:36, Test project 2019-11-02 22:06:58, Test project 2019-11-02 22:10:04, Test project for pISA (104), _p_stRT, Test project 2019-11-13 21:46:46, Test project 2019-11-13 21:57:39, Test project 2019-11-13 21:59:51, Test project 2021-07-12 18:25:58, _p_Demo, Bla, Test project 2021-07-14 20:52:52, Test project 2021-07-14 20:54:23, Test project 2021-07-14 20:57:21, Test project 2021-07-15 23:13:46, Test project 2021-07-15 23:14:58, Test project 2021-07-15 23:16:29, Test project 2021-07-16 18:42:56, Test project 2021-07-16 18:43:56, Test project 2021-07-16 18:58:32, Test project 2021-07-16 19:00:28, Test project 2021-07-16 19:14:43, Test project 2021-07-16 19:17:03, Test project 2021-07-16 20:07:34, Test project 2021-07-17 20:31:23, Test project 2021-07-17 20:49:21, Test project abc, Test project abcd, Test project abcde, Test project 2021-07-18 21:54:46, Test project 2021-07-18 22:00:39, Test project 2021-07-18 23:08:33, Test project 2021-07-18 23:23:02, Test project 2021-07-21 00:08:04, Test project 2021-07-21 00:17:06, Test project 2021-07-21 00:18:25, Test project 2021-08-20 22:56:43, Testing of upload, _p_RNAinVAL
Web page: Not specified
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This is a demo project used for the demonstration of R package seekr functionality. R package seekr is based on SEEKR-API and enables batch upload of files organized in pISA-tree structure.
Programme: pISA-tree
Public web page: https://github.com/NIB-SI/seekr
Advanced Investigations list for this Data file with search and filtering
Investigation: _I_EnViRoS Short Name: EnViRoS Title: Integration of data from different platforms Description: * Phenodata: ./phenodata_20201113.txt pISA Investigation creation date: 2020-11-13 pISA Investigation creator: AB Principal investigator: * License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: Investigation files, _S_01_Integ
Assays: _A_01_Desc-R, _A_02_Upload-R, _I_EnViRoS-files, _S_01_Integ-files
Advanced Studies list for this Data file with search and filtering
Study: _S_01_Integ Short Name: 01_Integ Title: * Description: * Raw Data: pISA Study creation date: 2020-11-13 pISA Study creator: AB Principal investigator: * License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_EnViRoS | 2021-11-07 17:07:06
Assays: _A_01_Desc-R, _A_02_Upload-R, _S_01_Integ-files
Advanced Assays list for this Data file with search and filtering
Assay: _A_01_Desc-R Short Name: 01_Desc-R Assay Class: DRY Assay Type: R Title: Data overview and descriptive statistical presentation Description: First we will organize the data and perfom preliminary data analyses to overview what we have. pISA Assay creation date: 2020-11-13 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Phenodata: Phenodata_20201109.txt Featuredata: Transcripts1819-02.txt Featuredata metabolites: Featuredata_metabolites_210127.txt Transcript data 18: /input/Transcripts ...
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_EnViRoS | 2021-11-07 17:07:06
Study: _S_01_Integ
