output/EGFP/Egfp_dsRNA_region_splitter.tsv Version 1
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_08_SelTargetsA-dry/
SEEK ID: https://testing.sysmo-db.org/data_files/1946?version=1
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output/EGFP/Egfp_dsRNA_region_splitter.tsv
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Query_ID Query_length Target_ID Target_length Target_description E-value Identity% Aligned_seq_length Score Positives% Gaps% egfp_Guo2015_46-66 21 LDEC015327-RA 1380 0.073 100 16 30.1 0 egfp_Guo2015_47-67 21 LDEC015327-RA 1380 0.073 100 16 30.1 0 egfp_Guo2015_48-68 21 LDEC015327-RA 1380 0.073 100 16 30.1 0 egfp_Guo2015_49-69 21 LDEC015327-RA 1380 0.073 100 16 30.1 0 egfp_Guo2015_50-70 21 LDEC015327-RA 1380 0.073 100 16 30.1 0 egfp_Guo2015_51-71 21 LDEC015327-RA 1380 0.073 100 16 30.1 0 egfp_Guo2015_62-82 21 LDEC011368-RA 693 0.073 90 21 30.1 0 egfp_Guo2015_63-83 21 LDEC011368-RA 693 0.073 90 21 30.1 0 egfp_Guo2015_179-199 21 LDEC001516-RA 3195 0.073 100 16 30.1 0 egfp_Guo2015_180-200 21 LDEC001516-RA 3195 0.073 100 16 30.1 0 egfp_Guo2015_181-201 21 LDEC001516-RA 3195 0.073 100 16 30.1 0 egfp_Guo2015_182-202 21 LDEC001516-RA 3195 0.073 100 16 30.1 0 egfp_Guo2015_183-203 21 LDEC001516-RA 3195 0.073 100 16 30.1 0 egfp_Guo2015_184-204 21 LDEC001516-RA 3195 0.073 100 16 30.1 0 egfp_Guo2015_214-234 21 LDEC017581-RA 919 0.073 95 19 30.1 0 egfp_Guo2015_215-235 21 LDEC017581-RA 919 0.073 95 19 30.1 0 egfp_Guo2015_216-236 21 LDEC017581-RA 919 0.073 95 19 30.1 0 egfp_Guo2015_342-362 21 LDEC003517-RA 1416 0.073 90 21 30.1 0 egfp_Guo2015_349-369 21 LDEC009053-RA 5982 0.073 100 16 30.1 0 egfp_Guo2015_350-370 21 LDEC009053-RA 5982 0.073 100 16 30.1 0 egfp_Guo2015_351-371 21 LDEC009053-RA 5982 0.073 100 16 30.1 0 egfp_Guo2015_352-372 21 LDEC009053-RA 5982 0.073 100 16 30.1 0 egfp_Guo2015_353-373 21 LDEC009053-RA 5982 0.073 100 16 30.1 0 egfp_Guo2015_354-374 21 LDEC009053-RA 5982 0.073 100 16 30.1 0 egfp_Guo2015_358-378 21 LDEC015126-RA 1448 0.073 95 19 30.1 0 egfp_Guo2015_359-379 21 LDEC015126-RA 1448 0.021 95 20 31.9 0 egfp_Guo2015_360-380 21 LDEC015126-RA 1448 0.021 95 20 31.9 0 egfp_Guo2015_361-381 21 LDEC015126-RA 1448 0.021 100 17 31.9 0 egfp_Guo2015_362-382 21 LDEC015126-RA 1448 0.021 100 17 31.9 0 egfp_Guo2015_363-383 21 LDEC015126-RA 1448 0.021 100 17 31.9 0 egfp_Guo2015_364-384 21 LDEC015126-RA 1448 0.073 100 16 30.1 0
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Created: 10th Nov 2021 at 15:10
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Programme: pISA-tree
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Short Name: 01_LabTrials Title: Laboratory trials Description: Selection of targets and their validation in trials performed in the laboratories and greenhouse at NIB Phenodata: ./phenodata_20210113.txt pISA Investigation creation date: 2021-01-13 pISA Investigation creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: Investigation files, _S_01_TargetSelect, _S_02_dsRNAorder, _S_03_dsRNAprod, _S_04_Stages, _S_05_jun2016, _S_06_oct2016, _S_07_dec2016, _S_08_jan2017, _S_09_jun2017, _S_10_apr2018, _S_11_may2018
Assays: _A_00_Ecoli-dry, _A_00_dsRNA_stabil-wet, _A_01-phenotyping, _A_01-phenotyping, _A_01-phenotyping, _A_01-phenotyping, _A_01-phenotyping, _A_01_AgroRNA-wet, _A_01_LitData-dry, _A_01_pIsol-wet, _A_02-RNAisol, _A_02-RNAisol, _A_02-RNAisol, _A_02_UlrichTop100-BLAST, _A_02_plasmid-SangerSeq, _A_02_qPCR_ampl_test-wet, _A_03-qPCR, _A_03-qPCR, _A_03-qPCR, _A_03_RNaseItreat-wet, _A_03_patentDB-BLAST, _A_03_stages-RNAisol, _A_04_ortho-BLAST, _A_04_prod-qPCR, _A_04_stages-qPCR, _A_05_CPB_gene-annot, _A_06_splitter_BLAST-dry, _A_07_MergeEvi-dry, _A_08_SelTargetsA-dry, _I_01_LabTrials-files, _S_01_TargetSelect-files, _S_02_dsRNAorder-files, _S_03_dsRNAprod-files, _S_04_Stages-files, _S_05_jun2016-files, _S_06_oct2016-files, _S_07_dec2016-files, _S_08_jan2017-files, _S_09_jun2017-files, _S_10_apr2018-files, _S_11_may2018-files
Short Name: 01_TargetSelect Title: Search for genes that might be good targets for control using dsRNAs (RNAi pesticides) Description: We will examine the results of RNAi screening experiments in model organisms (e.g. Drosophila melanogaster, Tribolium castaneum) as well as employ our previous data and literature knowledge on CPB gene expression and physiology Raw Data: pISA Study creation date: 2021-01-13 pISA Study creator: Marko Petek Principal investigator: Marko Petek License: CC BY 4.0 ...
Short Name: 08_SelTargetsA-dry Assay Class: DRY Assay Type: dry Title: Bioinformatics analyses for individual selected target genes Description: In depth bioinformatic analysis for each target gene using various tools to predict possible off-target effects and select a fragment sequence for dsRNA synthesis pISA Assay creation date: 2021-01-14 pISA Assay creator: Marko Petek Phenodata: None Featuredata: Data:
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_01_LabTrials
Study: _S_01_TargetSelect
