/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_myLog.txt Version 1
_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA
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output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_007290.txt_myLog.txt
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Thu Oct 10 21:48:00 CEST 2019 Using: selected_4_wc_aa/stPanTr_007290.txt and 5cv.cds.fasta #### ######## ######## ######## #### get sequences #### ######## ######## ######## #### ClustalOmega #### ######## ######## ######## #### mview #### ######## ######## ######## #### tree CLUSTAL 2.1 Multiple Sequence Alignments Sequence format is Pearson Sequence 1: CLCdnDe11_12336 6301 bp Sequence 2: Sotub06g026440.1.1 6301 bp Sequence 3: SdnRY1_127 6301 bp Sequence 4: SdnPW1_178 6301 bp Sequence 5: CLCdnRY10_44857 6301 bp Sequence 6: CLCdnRY11_47149 6301 bp Sequence 7: CLCdnRY11_70871 6301 bp Sequence 8: CLCdnPW29_72972 6301 bp Sequence 9: CLCdnPW50_81893 6301 bp Sequence 10: CLCdnPW6_71330 6301 bp Sequence 11: VdnPW1_33489 6301 bp Sequence 12: VdnPW1_33490 6301 bp Sequence 13: VdnDe3_10228 6301 bp Sequence 14: VdnDe3_10229 6301 bp Sequence 15: VdnDe4_33782 6301 bp WARNING: sequences 5 and 7 are non-overlapping WARNING: sequences 5 and 8 are non-overlapping WARNING: sequences 5 and 10 are non-overlapping WARNING: sequences 5 and 11 are non-overlapping WARNING: sequences 5 and 12 are non-overlapping WARNING: sequences 6 and 7 are non-overlapping WARNING: sequences 6 and 8 are non-overlapping WARNING: sequences 6 and 10 are non-overlapping WARNING: sequences 6 and 11 are non-overlapping WARNING: sequences 6 and 12 are non-overlapping WARNING: sequences 7 and 11 are non-overlapping WARNING: sequences 7 and 12 are non-overlapping WARNING: sequences 8 and 11 are non-overlapping WARNING: sequences 8 and 12 are non-overlapping WARNING: sequences 9 and 11 are non-overlapping WARNING: sequences 9 and 12 are non-overlapping WARNING: sequences 10 and 11 are non-overlapping WARNING: sequences 10 and 12 are non-overlapping Phylogenetic tree file created: [./cds_ClustalOmega_selected_4_wc_aa_150_off_5_28/stPanTr_007290.txt.ph] Results at ./cds_ClustalOmega_selected_4_wc_aa_150_off_5_28 Thu Oct 10 21:57:04 CEST 2019
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Created: 10th Nov 2019 at 23:21
Last updated: 10th Nov 2019 at 23:21
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Version 1 (earliest) Created 10th Nov 2019 at 23:21 by Andrej Blejec
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Institutions: National Institute of Biology, NIB, <script>alert('xss-institution-title')</script> & Test Institution
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Investigation: _I_STRT\n Short Name: STRT\n Title: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Phenodata: ./phenodata_20191022.txt pISA Investigation creation date: 2019-10-22 pISA Investigation creator: Maja Zagorscak Principal investigator: Kristina Gruden License: GPL-3 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: _S_01_sequences, _S_02_denovo, _S_03_stCuSTr, _S_04_stPanTr
Assays: _A_01_evigene, _A_01_evigene_1_3cvs-gffmerged, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_02_components_1_3cvs-gffmerged, _A_03.1_filtering, _A_03.2_components, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_04_TransRate, _A_05_BUSCO, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_01_sequences-files, _A__S_02_denovo-files, _A__S_03_stCuSTr-files, _A__S_04_stPanTr-files
/transfer/evg_out.tsv _p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO
Submitter: Andrej Blejec
Investigation: _I_STRT-1
Assays: _A_01_evigene_1_3cvs-gffmerged, _A_02_components_1_3cvs-gffmerged, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_04_stPanTr-files
Multiple sequence alignment, pantranscriptomes' paralogue clusters Multiple sequence alignment, pantranscriptomes' paralogue clusters
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: _I_STRT-1
Study: _S_04_stPanTr
