Thu Oct 10 21:48:00 CEST 2019 Using: selected_4_wc_aa/stPanTr_007290.txt and 5cv.cds.fasta #### ######## ######## ######## #### get sequences #### ######## ######## ######## #### ClustalOmega #### ######## ######## ######## #### mview #### ######## ######## ######## #### tree CLUSTAL 2.1 Multiple Sequence Alignments Sequence format is Pearson Sequence 1: CLCdnDe11_12336 6301 bp Sequence 2: Sotub06g026440.1.1 6301 bp Sequence 3: SdnRY1_127 6301 bp Sequence 4: SdnPW1_178 6301 bp Sequence 5: CLCdnRY10_44857 6301 bp Sequence 6: CLCdnRY11_47149 6301 bp Sequence 7: CLCdnRY11_70871 6301 bp Sequence 8: CLCdnPW29_72972 6301 bp Sequence 9: CLCdnPW50_81893 6301 bp Sequence 10: CLCdnPW6_71330 6301 bp Sequence 11: VdnPW1_33489 6301 bp Sequence 12: VdnPW1_33490 6301 bp Sequence 13: VdnDe3_10228 6301 bp Sequence 14: VdnDe3_10229 6301 bp Sequence 15: VdnDe4_33782 6301 bp WARNING: sequences 5 and 7 are non-overlapping WARNING: sequences 5 and 8 are non-overlapping WARNING: sequences 5 and 10 are non-overlapping WARNING: sequences 5 and 11 are non-overlapping WARNING: sequences 5 and 12 are non-overlapping WARNING: sequences 6 and 7 are non-overlapping WARNING: sequences 6 and 8 are non-overlapping WARNING: sequences 6 and 10 are non-overlapping WARNING: sequences 6 and 11 are non-overlapping WARNING: sequences 6 and 12 are non-overlapping WARNING: sequences 7 and 11 are non-overlapping WARNING: sequences 7 and 12 are non-overlapping WARNING: sequences 8 and 11 are non-overlapping WARNING: sequences 8 and 12 are non-overlapping WARNING: sequences 9 and 11 are non-overlapping WARNING: sequences 9 and 12 are non-overlapping WARNING: sequences 10 and 11 are non-overlapping WARNING: sequences 10 and 12 are non-overlapping Phylogenetic tree file created: [./cds_ClustalOmega_selected_4_wc_aa_150_off_5_28/stPanTr_007290.txt.ph] Results at ./cds_ClustalOmega_selected_4_wc_aa_150_off_5_28 Thu Oct 10 21:57:04 CEST 2019