/output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_myLog.txt Version 1
_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA
SEEK ID: https://testing.sysmo-db.org/data_files/1082?version=1
Filename:
output/out_aa_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_028778.txt_myLog.txt
Format: Plain text document
Size: 1.15 KB
Thu Oct 10 21:41:04 CEST 2019 Using: selected_4_wc_aa/stPanTr_028778.txt and 5cv.aa.fasta #### ######## ######## ######## #### get sequences #### ######## ######## ######## #### ClustalOmega #### ######## ######## ######## #### mview #### ######## ######## ######## #### tree CLUSTAL 2.1 Multiple Sequence Alignments Sequence format is Pearson Sequence 1: Sotub01g024670.1.1 290 aa Sequence 2: CLCdnRY1_27548 290 aa Sequence 3: VdnPW2_91756 290 aa Sequence 4: CLCdnDe4_49240 290 aa Sequence 5: VdnRY4_11333 290 aa Sequence 6: CLCdnPW32_6955 290 aa Sequence 7: CLCdnPW34_6917 290 aa Sequence 8: CLCdnPW36_59536 290 aa Sequence 9: CLCdnPW50_7647 290 aa Sequence 10: VdnPW1_117761 290 aa Sequence 11: VdnPW3_63321 290 aa Sequence 12: VdnDe2_152369 290 aa Sequence 13: VdnDe3_126734 290 aa Sequence 14: VdnDe4_109815 290 aa Sequence 15: VdnDe4_109816 290 aa Phylogenetic tree file created: [./out_ClustalOmega_selected_4_wc_aa_150_off_5_28/stPanTr_028778.txt.ph] Results at ./out_ClustalOmega_selected_4_wc_aa_150_off_5_28 Thu Oct 10 21:41:15 CEST 2019
Export PNG
Creators and Submitter
Views: 1304 Downloads: 19
Created: 10th Nov 2019 at 23:20
Last updated: 10th Nov 2019 at 23:20
AttributionsNone
Version History
Version 1 (earliest) Created 10th Nov 2019 at 23:20 by Andrej Blejec
No revision comments
Related items
Projects: testUpload, Test project 2019-10-30 11:13:00, Test project 2019-10-30 11:09:39, Test project 2019-11-02 19:40:30, Test project for pISA (104), _p_stRT, _p_Demo, Bla, Test project abcd, Test project 2021-07-18 22:00:39, Test project 2021-07-18 22:45:54, Test project 2021-07-18 23:08:33, Test project 2021-07-18 23:23:02, Test project 2021-07-21 00:08:04, Test project 2021-07-21 00:17:06, Test project 2021-07-21 00:18:25, Test project 2021-08-20 22:56:43, Testing of upload, _p_RNAinVAL
Institutions: National Institute of Biology, NIB, <script>alert('xss-institution-title')</script> & Test Institution
https://orcid.org/0000-0001-7484-6031
Local data management; testing uploading/downloading using API
Projects: testUpload, *, New project, New project 1, Test Project 7, Test Project, Test Project 8, Test Project 9, Test Project 10, Test Project 11, Test Project 12, Test Project 14, Test Project 13, Test Project 15, Test Project 16, Test Project 17, Test Project 18, Test: investigations 2019-10-30 11:00:08, Test: investigations 2019-10-30 11:02:00, Test project 2019-10-30 11:04:02, Test project 2019-10-30 11:08:47, Test project 2019-10-30 11:09:39, Test project 2019-10-30 11:10:03, Test project 2019-10-30 11:13:00, Test project 2019-11-01 11:41:43, Test project 2019-11-01 11:44:23, Test Project 20, Test project 21 2019-11-01 11:44:23, Test Project 21, Test project 23 2019-11-01 11:44:23, Test project 24 2019-11-01 11:44:23, Test project 33 2019-11-01 11:57:55, Test project 2019-11-01 12:01:35, Test project 40 2019-11-01 11:57:55, Test project 41 2019-11-01 11:57:55, Test project 42 2019-11-01 11:57:55, Test project 43 2019-11-01 11:57:55, Test project 44 2019-11-01 11:57:55, Test project 47 2019-11-01 11:57:55, Test project 48 2019-11-01 11:57:55, Test project 2019-11-01 19:36:07, Test project 2019-11-02 19:35:45, Test project 2019-11-02 19:40:30, Test project 50 2019-11-01 11:57:55, Test project 2019-11-02 19:47:45, Test project 51 2019-11-01 11:57:55, Test project 2019-11-02 20:22:36, Test project 2019-11-02 22:06:58, Test project 2019-11-02 22:10:04, Test project for pISA (104), _p_stRT, Test project 2019-11-13 21:46:46, Test project 2019-11-13 21:57:39, Test project 2019-11-13 21:59:51, Test project 2021-07-12 18:25:58, _p_Demo, Bla, Test project 2021-07-14 20:52:52, Test project 2021-07-14 20:54:23, Test project 2021-07-14 20:57:21, Test project 2021-07-15 23:13:46, Test project 2021-07-15 23:14:58, Test project 2021-07-15 23:16:29, Test project 2021-07-16 18:42:56, Test project 2021-07-16 18:43:56, Test project 2021-07-16 18:58:32, Test project 2021-07-16 19:00:28, Test project 2021-07-16 19:14:43, Test project 2021-07-16 19:17:03, Test project 2021-07-16 20:07:34, Test project 2021-07-17 20:31:23, Test project 2021-07-17 20:49:21, Test project abc, Test project abcd, Test project abcde, Test project 2021-07-18 21:54:46, Test project 2021-07-18 22:00:39, Test project 2021-07-18 23:08:33, Test project 2021-07-18 23:23:02, Test project 2021-07-21 00:08:04, Test project 2021-07-21 00:17:06, Test project 2021-07-21 00:18:25, Test project 2021-08-20 22:56:43, Testing of upload, _p_RNAinVAL
Web page: Not specified
Investigation: _I_STRT\n Short Name: STRT\n Title: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Phenodata: ./phenodata_20191022.txt pISA Investigation creation date: 2019-10-22 pISA Investigation creator: Maja Zagorscak Principal investigator: Kristina Gruden License: GPL-3 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: _S_01_sequences, _S_02_denovo, _S_03_stCuSTr, _S_04_stPanTr
Assays: _A_01_evigene, _A_01_evigene_1_3cvs-gffmerged, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_02_components_1_3cvs-gffmerged, _A_03.1_filtering, _A_03.2_components, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_04_TransRate, _A_05_BUSCO, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_01_sequences-files, _A__S_02_denovo-files, _A__S_03_stCuSTr-files, _A__S_04_stPanTr-files
/transfer/evg_out.tsv _p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO
Submitter: Andrej Blejec
Investigation: _I_STRT-1
Assays: _A_01_evigene_1_3cvs-gffmerged, _A_02_components_1_3cvs-gffmerged, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_04_stPanTr-files
Multiple sequence alignment, pantranscriptomes' paralogue clusters Multiple sequence alignment, pantranscriptomes' paralogue clusters
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: _I_STRT-1
Study: _S_04_stPanTr
