/output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt_myLog.txt Version 1
_p_stRT/_I_STRT/_S_04_stPanTr/_A_04-MSA
SEEK ID: https://testing.sysmo-db.org/data_files/1118?version=1
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output/out_cds_ClustalOmega_selected_4_wc_150_off_5_28/stPanTr_079878.txt_myLog.txt
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Thu Oct 10 21:57:04 CEST 2019 Using: selected_4_wc_aa/stPanTr_079878.txt and 5cv.cds.fasta #### ######## ######## ######## #### get sequences #### ######## ######## ######## #### ClustalOmega #### ######## ######## ######## #### mview #### ######## ######## ######## #### tree CLUSTAL 2.1 Multiple Sequence Alignments Sequence format is Pearson Sequence 1: VdnRY5_12456 696 bp Sequence 2: Sotub07g019550.1.1 696 bp Sequence 3: VdnPW4_91431 696 bp Sequence 4: VdnDe7_18849 696 bp Sequence 5: CLCdnRY10_37978 696 bp Sequence 6: CLCdnRY6_59193 696 bp Sequence 7: CLCdnRY8_30198 696 bp Sequence 8: VdnRY4_25747 696 bp Sequence 9: VdnPW3_91379 696 bp Sequence 10: VdnDe1_113125 696 bp Phylogenetic tree file created: [./cds_ClustalOmega_selected_4_wc_aa_150_off_5_28/stPanTr_079878.txt.ph] Results at ./cds_ClustalOmega_selected_4_wc_aa_150_off_5_28 Thu Oct 10 21:57:16 CEST 2019
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Created: 10th Nov 2019 at 23:22
Last updated: 10th Nov 2019 at 23:22
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Version 1 (earliest) Created 10th Nov 2019 at 23:22 by Andrej Blejec
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Projects: testUpload, Test project 2019-10-30 11:13:00, Test project 2019-10-30 11:09:39, Test project 2019-11-02 19:40:30, Test project for pISA (104), _p_stRT, _p_Demo, Bla, Test project abcd, Test project 2021-07-18 22:00:39, Test project 2021-07-18 22:45:54, Test project 2021-07-18 23:08:33, Test project 2021-07-18 23:23:02, Test project 2021-07-21 00:08:04, Test project 2021-07-21 00:17:06, Test project 2021-07-21 00:18:25, Test project 2021-08-20 22:56:43, Testing of upload, _p_RNAinVAL
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Investigation: _I_STRT\n Short Name: STRT\n Title: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Phenodata: ./phenodata_20191022.txt pISA Investigation creation date: 2019-10-22 pISA Investigation creator: Maja Zagorscak Principal investigator: Kristina Gruden License: GPL-3 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: _S_01_sequences, _S_02_denovo, _S_03_stCuSTr, _S_04_stPanTr
Assays: _A_01_evigene, _A_01_evigene_1_3cvs-gffmerged, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_02_components_1_3cvs-gffmerged, _A_03.1_filtering, _A_03.2_components, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_04_TransRate, _A_05_BUSCO, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_01_sequences-files, _A__S_02_denovo-files, _A__S_03_stCuSTr-files, _A__S_04_stPanTr-files
/transfer/evg_out.tsv _p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO
Submitter: Andrej Blejec
Investigation: _I_STRT-1
Assays: _A_01_evigene_1_3cvs-gffmerged, _A_02_components_1_3cvs-gffmerged, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_04_stPanTr-files
Multiple sequence alignment, pantranscriptomes' paralogue clusters Multiple sequence alignment, pantranscriptomes' paralogue clusters
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: _I_STRT-1
Study: _S_04_stPanTr
