/output/PW363_assemblies.txt Version 1
_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO
SEEK ID: https://testing.sysmo-db.org/data_files/849?version=1
Filename:
output/PW363_assemblies.txt
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# BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW10.fasta -o BUSCOtran.n_CLCdnPW10.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW10.fasta # BUSCO was run in mode: transcriptome C:50.1%[S:48.0%,D:2.1%],F:24.4%,M:25.5%,n:1440 721 Complete BUSCOs (C) 691 Complete and single-copy BUSCOs (S) 30 Complete and duplicated BUSCOs (D) 352 Fragmented BUSCOs (F) 367 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW11.fasta -o BUSCOtran.n_CLCdnPW11.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW11.fasta # BUSCO was run in mode: transcriptome C:54.3%[S:52.4%,D:1.9%],F:22.2%,M:23.5%,n:1440 782 Complete BUSCOs (C) 754 Complete and single-copy BUSCOs (S) 28 Complete and duplicated BUSCOs (D) 319 Fragmented BUSCOs (F) 339 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW12.fasta -o BUSCOtran.n_CLCdnPW12.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW12.fasta # BUSCO was run in mode: transcriptome C:46.5%[S:44.6%,D:1.9%],F:27.4%,M:26.1%,n:1440 670 Complete BUSCOs (C) 642 Complete and single-copy BUSCOs (S) 28 Complete and duplicated BUSCOs (D) 395 Fragmented BUSCOs (F) 375 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW13.fasta -o BUSCOtran.n_CLCdnPW13.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW13.fasta # BUSCO was run in mode: transcriptome C:42.1%[S:40.3%,D:1.8%],F:26.3%,M:31.6%,n:1440 607 Complete BUSCOs (C) 581 Complete and single-copy BUSCOs (S) 26 Complete and duplicated BUSCOs (D) 378 Fragmented BUSCOs (F) 455 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW14.fasta -o BUSCOtran.n_CLCdnPW14.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW14.fasta # BUSCO was run in mode: transcriptome C:50.9%[S:49.0%,D:1.9%],F:25.3%,M:23.8%,n:1440 732 Complete BUSCOs (C) 705 Complete and single-copy BUSCOs (S) 27 Complete and duplicated BUSCOs (D) 365 Fragmented BUSCOs (F) 343 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW15.fasta -o BUSCOtran.n_CLCdnPW15.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW15.fasta # BUSCO was run in mode: transcriptome C:55.0%[S:53.1%,D:1.9%],F:23.1%,M:21.9%,n:1440 791 Complete BUSCOs (C) 764 Complete and single-copy BUSCOs (S) 27 Complete and duplicated BUSCOs (D) 333 Fragmented BUSCOs (F) 316 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW16.fasta -o BUSCOtran.n_CLCdnPW16.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW16.fasta # BUSCO was run in mode: transcriptome C:44.1%[S:42.4%,D:1.7%],F:28.1%,M:27.8%,n:1440 634 Complete BUSCOs (C) 610 Complete and single-copy BUSCOs (S) 24 Complete and duplicated BUSCOs (D) 404 Fragmented BUSCOs (F) 402 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW17.fasta -o BUSCOtran.n_CLCdnPW17.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW17.fasta # BUSCO was run in mode: transcriptome C:47.8%[S:45.8%,D:2.0%],F:25.8%,M:26.4%,n:1440 688 Complete BUSCOs (C) 659 Complete and single-copy BUSCOs (S) 29 Complete and duplicated BUSCOs (D) 371 Fragmented BUSCOs (F) 381 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW18.fasta -o BUSCOtran.n_CLCdnPW18.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW18.fasta # BUSCO was run in mode: transcriptome C:52.2%[S:50.5%,D:1.7%],F:22.9%,M:24.9%,n:1440 752 Complete BUSCOs (C) 727 Complete and single-copy BUSCOs (S) 25 Complete and duplicated BUSCOs (D) 330 Fragmented BUSCOs (F) 358 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW19.fasta -o BUSCOtran.n_CLCdnPW19.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW19.fasta # BUSCO was run in mode: transcriptome C:40.1%[S:38.3%,D:1.8%],F:29.0%,M:30.9%,n:1440 577 Complete BUSCOs (C) 551 Complete and single-copy BUSCOs (S) 26 Complete and duplicated BUSCOs (D) 417 Fragmented BUSCOs (F) 446 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW1.fasta -o BUSCOtran.n_CLCdnPW1.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW1.fasta # BUSCO was run in mode: transcriptome C:9.0%[S:8.7%,D:0.3%],F:13.7%,M:77.3%,n:1440 130 Complete BUSCOs (C) 125 Complete and single-copy BUSCOs (S) 5 Complete and duplicated BUSCOs (D) 197 Fragmented BUSCOs (F) 1113 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW20.fasta -o BUSCOtran.n_CLCdnPW20.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW20.fasta # BUSCO was run in mode: transcriptome C:44.6%[S:42.7%,D:1.9%],F:26.3%,M:29.1%,n:1440 643 Complete BUSCOs (C) 615 Complete and single-copy BUSCOs (S) 28 Complete and duplicated BUSCOs (D) 378 Fragmented BUSCOs (F) 419 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW21.fasta -o BUSCOtran.n_CLCdnPW21.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW21.fasta # BUSCO was run in mode: transcriptome C:48.7%[S:46.5%,D:2.2%],F:24.4%,M:26.9%,n:1440 700 Complete BUSCOs (C) 669 Complete and single-copy BUSCOs (S) 31 Complete and duplicated BUSCOs (D) 351 Fragmented BUSCOs (F) 389 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW22.fasta -o BUSCOtran.n_CLCdnPW22.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW22.fasta # BUSCO was run in mode: transcriptome C:45.8%[S:44.2%,D:1.6%],F:26.2%,M:28.0%,n:1440 660 Complete BUSCOs (C) 637 Complete and single-copy BUSCOs (S) 23 Complete and duplicated BUSCOs (D) 377 Fragmented BUSCOs (F) 403 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW23.fasta -o BUSCOtran.n_CLCdnPW23.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW23.fasta # BUSCO was run in mode: transcriptome C:48.6%[S:46.6%,D:2.0%],F:24.7%,M:26.7%,n:1440 700 Complete BUSCOs (C) 671 Complete and single-copy BUSCOs (S) 29 Complete and duplicated BUSCOs (D) 355 Fragmented BUSCOs (F) 385 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW24.fasta -o BUSCOtran.n_CLCdnPW24.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW24.fasta # BUSCO was run in mode: transcriptome C:44.1%[S:42.0%,D:2.1%],F:25.8%,M:30.1%,n:1440 635 Complete BUSCOs (C) 605 Complete and single-copy BUSCOs (S) 30 Complete and duplicated BUSCOs (D) 372 Fragmented BUSCOs (F) 433 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW25.fasta -o BUSCOtran.n_CLCdnPW25.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW25.fasta # BUSCO was run in mode: transcriptome C:52.6%[S:50.9%,D:1.7%],F:22.9%,M:24.5%,n:1440 758 Complete BUSCOs (C) 733 Complete and single-copy BUSCOs (S) 25 Complete and duplicated BUSCOs (D) 330 Fragmented BUSCOs (F) 352 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW26.fasta -o BUSCOtran.n_CLCdnPW26.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW26.fasta # BUSCO was run in mode: transcriptome C:47.9%[S:46.4%,D:1.5%],F:26.5%,M:25.6%,n:1440 689 Complete BUSCOs (C) 668 Complete and single-copy BUSCOs (S) 21 Complete and duplicated BUSCOs (D) 381 Fragmented BUSCOs (F) 370 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW27.fasta -o BUSCOtran.n_CLCdnPW27.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW27.fasta # BUSCO was run in mode: transcriptome C:52.2%[S:50.3%,D:1.9%],F:24.0%,M:23.8%,n:1440 751 Complete BUSCOs (C) 724 Complete and single-copy BUSCOs (S) 27 Complete and duplicated BUSCOs (D) 345 Fragmented BUSCOs (F) 344 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW28.fasta -o BUSCOtran.n_CLCdnPW28.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW28.fasta # BUSCO was run in mode: transcriptome C:56.3%[S:54.2%,D:2.1%],F:22.2%,M:21.5%,n:1440 810 Complete BUSCOs (C) 780 Complete and single-copy BUSCOs (S) 30 Complete and duplicated BUSCOs (D) 320 Fragmented BUSCOs (F) 310 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW29.fasta -o BUSCOtran.n_CLCdnPW29.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW29.fasta # BUSCO was run in mode: transcriptome C:47.1%[S:45.4%,D:1.7%],F:26.3%,M:26.6%,n:1440 678 Complete BUSCOs (C) 654 Complete and single-copy BUSCOs (S) 24 Complete and duplicated BUSCOs (D) 379 Fragmented BUSCOs (F) 383 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW2.fasta -o BUSCOtran.n_CLCdnPW2.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW2.fasta # BUSCO was run in mode: transcriptome C:40.1%[S:37.7%,D:2.4%],F:21.3%,M:38.6%,n:1440 577 Complete BUSCOs (C) 543 Complete and single-copy BUSCOs (S) 34 Complete and duplicated BUSCOs (D) 307 Fragmented BUSCOs (F) 556 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW30.fasta -o BUSCOtran.n_CLCdnPW30.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW30.fasta # BUSCO was run in mode: transcriptome C:50.8%[S:49.1%,D:1.7%],F:24.6%,M:24.6%,n:1440 731 Complete BUSCOs (C) 707 Complete and single-copy BUSCOs (S) 24 Complete and duplicated BUSCOs (D) 354 Fragmented BUSCOs (F) 355 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW31.fasta -o BUSCOtran.n_CLCdnPW31.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW31.fasta # BUSCO was run in mode: transcriptome C:54.8%[S:53.5%,D:1.3%],F:22.6%,M:22.6%,n:1440 789 Complete BUSCOs (C) 770 Complete and single-copy BUSCOs (S) 19 Complete and duplicated BUSCOs (D) 326 Fragmented BUSCOs (F) 325 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW32.fasta -o BUSCOtran.n_CLCdnPW32.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW32.fasta # BUSCO was run in mode: transcriptome C:41.9%[S:40.2%,D:1.7%],F:28.1%,M:30.0%,n:1440 604 Complete BUSCOs (C) 579 Complete and single-copy BUSCOs (S) 25 Complete and duplicated BUSCOs (D) 405 Fragmented BUSCOs (F) 431 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW33.fasta -o BUSCOtran.n_CLCdnPW33.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW33.fasta # BUSCO was run in mode: transcriptome C:46.3%[S:44.4%,D:1.9%],F:25.6%,M:28.1%,n:1440 666 Complete BUSCOs (C) 639 Complete and single-copy BUSCOs (S) 27 Complete and duplicated BUSCOs (D) 369 Fragmented BUSCOs (F) 405 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW34.fasta -o BUSCOtran.n_CLCdnPW34.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW34.fasta # BUSCO was run in mode: transcriptome C:49.9%[S:48.1%,D:1.8%],F:24.0%,M:26.1%,n:1440 719 Complete BUSCOs (C) 693 Complete and single-copy BUSCOs (S) 26 Complete and duplicated BUSCOs (D) 345 Fragmented BUSCOs (F) 376 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW35.fasta -o BUSCOtran.n_CLCdnPW35.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW35.fasta # BUSCO was run in mode: transcriptome C:49.2%[S:47.3%,D:1.9%],F:23.3%,M:27.5%,n:1440 708 Complete BUSCOs (C) 681 Complete and single-copy BUSCOs (S) 27 Complete and duplicated BUSCOs (D) 336 Fragmented BUSCOs (F) 396 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW36.fasta -o BUSCOtran.n_CLCdnPW36.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW36.fasta # BUSCO was run in mode: transcriptome C:35.1%[S:32.7%,D:2.4%],F:30.5%,M:34.4%,n:1440 506 Complete BUSCOs (C) 471 Complete and single-copy BUSCOs (S) 35 Complete and duplicated BUSCOs (D) 439 Fragmented BUSCOs (F) 495 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW37.fasta -o BUSCOtran.n_CLCdnPW37.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW37.fasta # BUSCO was run in mode: transcriptome C:38.9%[S:36.6%,D:2.3%],F:29.3%,M:31.8%,n:1440 560 Complete BUSCOs (C) 527 Complete and single-copy BUSCOs (S) 33 Complete and duplicated BUSCOs (D) 422 Fragmented BUSCOs (F) 458 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW38.fasta -o BUSCOtran.n_CLCdnPW38.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW38.fasta # BUSCO was run in mode: transcriptome C:41.8%[S:39.6%,D:2.2%],F:27.6%,M:30.6%,n:1440 602 Complete BUSCOs (C) 570 Complete and single-copy BUSCOs (S) 32 Complete and duplicated BUSCOs (D) 398 Fragmented BUSCOs (F) 440 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW39.fasta -o BUSCOtran.n_CLCdnPW39.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW39.fasta # BUSCO was run in mode: transcriptome C:47.8%[S:46.2%,D:1.6%],F:26.3%,M:25.9%,n:1440 688 Complete BUSCOs (C) 665 Complete and single-copy BUSCOs (S) 23 Complete and duplicated BUSCOs (D) 378 Fragmented BUSCOs (F) 374 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW3.fasta -o BUSCOtran.n_CLCdnPW3.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW3.fasta # BUSCO was run in mode: transcriptome C:47.7%[S:46.1%,D:1.6%],F:26.8%,M:25.5%,n:1440 687 Complete BUSCOs (C) 664 Complete and single-copy BUSCOs (S) 23 Complete and duplicated BUSCOs (D) 386 Fragmented BUSCOs (F) 367 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW40.fasta -o BUSCOtran.n_CLCdnPW40.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW40.fasta # BUSCO was run in mode: transcriptome C:51.3%[S:49.4%,D:1.9%],F:24.3%,M:24.4%,n:1440 740 Complete BUSCOs (C) 712 Complete and single-copy BUSCOs (S) 28 Complete and duplicated BUSCOs (D) 350 Fragmented BUSCOs (F) 350 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW41.fasta -o BUSCOtran.n_CLCdnPW41.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW41.fasta # BUSCO was run in mode: transcriptome C:55.3%[S:53.5%,D:1.8%],F:22.4%,M:22.3%,n:1440 796 Complete BUSCOs (C) 770 Complete and single-copy BUSCOs (S) 26 Complete and duplicated BUSCOs (D) 322 Fragmented BUSCOs (F) 322 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW42.fasta -o BUSCOtran.n_CLCdnPW42.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW42.fasta # BUSCO was run in mode: transcriptome C:48.7%[S:47.4%,D:1.3%],F:25.3%,M:26.0%,n:1440 701 Complete BUSCOs (C) 683 Complete and single-copy BUSCOs (S) 18 Complete and duplicated BUSCOs (D) 364 Fragmented BUSCOs (F) 375 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW43.fasta -o BUSCOtran.n_CLCdnPW43.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW43.fasta # BUSCO was run in mode: transcriptome C:52.5%[S:51.3%,D:1.2%],F:23.6%,M:23.9%,n:1440 756 Complete BUSCOs (C) 739 Complete and single-copy BUSCOs (S) 17 Complete and duplicated BUSCOs (D) 340 Fragmented BUSCOs (F) 344 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW44.fasta -o BUSCOtran.n_CLCdnPW44.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW44.fasta # BUSCO was run in mode: transcriptome C:55.7%[S:54.1%,D:1.6%],F:22.8%,M:21.5%,n:1440 802 Complete BUSCOs (C) 779 Complete and single-copy BUSCOs (S) 23 Complete and duplicated BUSCOs (D) 328 Fragmented BUSCOs (F) 310 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW45.fasta -o BUSCOtran.n_CLCdnPW45.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW45.fasta # BUSCO was run in mode: transcriptome C:51.3%[S:47.1%,D:4.2%],F:23.5%,M:25.2%,n:1440 738 Complete BUSCOs (C) 678 Complete and single-copy BUSCOs (S) 60 Complete and duplicated BUSCOs (D) 339 Fragmented BUSCOs (F) 363 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW46.fasta -o BUSCOtran.n_CLCdnPW46.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW46.fasta # BUSCO was run in mode: transcriptome C:55.9%[S:51.9%,D:4.0%],F:22.4%,M:21.7%,n:1440 805 Complete BUSCOs (C) 747 Complete and single-copy BUSCOs (S) 58 Complete and duplicated BUSCOs (D) 322 Fragmented BUSCOs (F) 313 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW47.fasta -o BUSCOtran.n_CLCdnPW47.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW47.fasta # BUSCO was run in mode: transcriptome C:62.9%[S:57.6%,D:5.3%],F:20.0%,M:17.1%,n:1440 905 Complete BUSCOs (C) 829 Complete and single-copy BUSCOs (S) 76 Complete and duplicated BUSCOs (D) 288 Fragmented BUSCOs (F) 247 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW48.fasta -o BUSCOtran.n_CLCdnPW48.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW48.fasta # BUSCO was run in mode: transcriptome C:65.6%[S:59.6%,D:6.0%],F:19.5%,M:14.9%,n:1440 944 Complete BUSCOs (C) 858 Complete and single-copy BUSCOs (S) 86 Complete and duplicated BUSCOs (D) 281 Fragmented BUSCOs (F) 215 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW49.fasta -o BUSCOtran.n_CLCdnPW49.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW49.fasta # BUSCO was run in mode: transcriptome C:69.5%[S:63.3%,D:6.2%],F:16.6%,M:13.9%,n:1440 1000 Complete BUSCOs (C) 911 Complete and single-copy BUSCOs (S) 89 Complete and duplicated BUSCOs (D) 239 Fragmented BUSCOs (F) 201 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW4.fasta -o BUSCOtran.n_CLCdnPW4.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW4.fasta # BUSCO was run in mode: transcriptome C:51.6%[S:49.9%,D:1.7%],F:24.6%,M:23.8%,n:1440 743 Complete BUSCOs (C) 719 Complete and single-copy BUSCOs (S) 24 Complete and duplicated BUSCOs (D) 354 Fragmented BUSCOs (F) 343 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW50.fasta -o BUSCOtran.n_CLCdnPW50.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW50.fasta # BUSCO was run in mode: transcriptome C:69.5%[S:61.0%,D:8.5%],F:16.5%,M:14.0%,n:1440 1001 Complete BUSCOs (C) 879 Complete and single-copy BUSCOs (S) 122 Complete and duplicated BUSCOs (D) 238 Fragmented BUSCOs (F) 201 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW5.fasta -o BUSCOtran.n_CLCdnPW5.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW5.fasta # BUSCO was run in mode: transcriptome C:55.9%[S:54.2%,D:1.7%],F:23.3%,M:20.8%,n:1440 805 Complete BUSCOs (C) 781 Complete and single-copy BUSCOs (S) 24 Complete and duplicated BUSCOs (D) 336 Fragmented BUSCOs (F) 299 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW6.fasta -o BUSCOtran.n_CLCdnPW6.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW6.fasta # BUSCO was run in mode: transcriptome C:47.9%[S:46.2%,D:1.7%],F:26.0%,M:26.1%,n:1440 689 Complete BUSCOs (C) 665 Complete and single-copy BUSCOs (S) 24 Complete and duplicated BUSCOs (D) 374 Fragmented BUSCOs (F) 377 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW7.fasta -o BUSCOtran.n_CLCdnPW7.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW7.fasta # BUSCO was run in mode: transcriptome C:51.5%[S:49.8%,D:1.7%],F:24.2%,M:24.3%,n:1440 741 Complete BUSCOs (C) 717 Complete and single-copy BUSCOs (S) 24 Complete and duplicated BUSCOs (D) 348 Fragmented BUSCOs (F) 351 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW8.fasta -o BUSCOtran.n_CLCdnPW8.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW8.fasta # BUSCO was run in mode: transcriptome C:56.3%[S:54.8%,D:1.5%],F:22.0%,M:21.7%,n:1440 811 Complete BUSCOs (C) 789 Complete and single-copy BUSCOs (S) 22 Complete and duplicated BUSCOs (D) 317 Fragmented BUSCOs (F) 312 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_CLCdnPW9.fasta -o BUSCOtran.n_CLCdnPW9.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_CLCdnPW9.fasta # BUSCO was run in mode: transcriptome C:47.1%[S:45.2%,D:1.9%],F:26.1%,M:26.8%,n:1440 679 Complete BUSCOs (C) 651 Complete and single-copy BUSCOs (S) 28 Complete and duplicated BUSCOs (D) 376 Fragmented BUSCOs (F) 385 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_SdnPW1.fasta -o BUSCOtran.n_SdnPW1.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_SdnPW1.fasta # BUSCO was run in mode: transcriptome C:73.7%[S:47.2%,D:26.5%],F:15.1%,M:11.2%,n:1440 1062 Complete BUSCOs (C) 680 Complete and single-copy BUSCOs (S) 382 Complete and duplicated BUSCOs (D) 217 Fragmented BUSCOs (F) 161 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_Trinity.fasta -o BUSCOtran.n_Trinity.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_Trinity.fasta # BUSCO was run in mode: transcriptome C:63.5%[S:42.7%,D:20.8%],F:17.3%,M:19.2%,n:1440 915 Complete BUSCOs (C) 615 Complete and single-copy BUSCOs (S) 300 Complete and duplicated BUSCOs (D) 249 Fragmented BUSCOs (F) 276 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW10.fasta -o BUSCOtran.n_VdnPW10.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW10.fasta # BUSCO was run in mode: transcriptome C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1440 0 Complete BUSCOs (C) 0 Complete and single-copy BUSCOs (S) 0 Complete and duplicated BUSCOs (D) 0 Fragmented BUSCOs (F) 1440 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW1.fasta -o BUSCOtran.n_VdnPW1.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW1.fasta # BUSCO was run in mode: transcriptome C:62.8%[S:14.0%,D:48.8%],F:20.2%,M:17.0%,n:1440 903 Complete BUSCOs (C) 201 Complete and single-copy BUSCOs (S) 702 Complete and duplicated BUSCOs (D) 291 Fragmented BUSCOs (F) 246 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW2.fasta -o BUSCOtran.n_VdnPW2.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW2.fasta # BUSCO was run in mode: transcriptome C:64.5%[S:16.2%,D:48.3%],F:19.1%,M:16.4%,n:1440 929 Complete BUSCOs (C) 233 Complete and single-copy BUSCOs (S) 696 Complete and duplicated BUSCOs (D) 275 Fragmented BUSCOs (F) 236 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW3.fasta -o BUSCOtran.n_VdnPW3.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW3.fasta # BUSCO was run in mode: transcriptome C:65.7%[S:18.0%,D:47.7%],F:16.5%,M:17.8%,n:1440 946 Complete BUSCOs (C) 259 Complete and single-copy BUSCOs (S) 687 Complete and duplicated BUSCOs (D) 238 Fragmented BUSCOs (F) 256 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW4.fasta -o BUSCOtran.n_VdnPW4.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW4.fasta # BUSCO was run in mode: transcriptome C:67.0%[S:18.4%,D:48.6%],F:13.5%,M:19.5%,n:1440 965 Complete BUSCOs (C) 265 Complete and single-copy BUSCOs (S) 700 Complete and duplicated BUSCOs (D) 194 Fragmented BUSCOs (F) 281 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW5.fasta -o BUSCOtran.n_VdnPW5.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW5.fasta # BUSCO was run in mode: transcriptome C:57.2%[S:17.9%,D:39.3%],F:18.1%,M:24.7%,n:1440 824 Complete BUSCOs (C) 258 Complete and single-copy BUSCOs (S) 566 Complete and duplicated BUSCOs (D) 260 Fragmented BUSCOs (F) 356 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW6.fasta -o BUSCOtran.n_VdnPW6.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW6.fasta # BUSCO was run in mode: transcriptome C:38.2%[S:16.3%,D:21.9%],F:22.8%,M:39.0%,n:1440 550 Complete BUSCOs (C) 235 Complete and single-copy BUSCOs (S) 315 Complete and duplicated BUSCOs (D) 329 Fragmented BUSCOs (F) 561 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW7.fasta -o BUSCOtran.n_VdnPW7.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW7.fasta # BUSCO was run in mode: transcriptome C:10.3%[S:7.0%,D:3.3%],F:13.3%,M:76.4%,n:1440 148 Complete BUSCOs (C) 101 Complete and single-copy BUSCOs (S) 47 Complete and duplicated BUSCOs (D) 191 Fragmented BUSCOs (F) 1101 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW8.fasta -o BUSCOtran.n_VdnPW8.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW8.fasta # BUSCO was run in mode: transcriptome C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1440 0 Complete BUSCOs (C) 0 Complete and single-copy BUSCOs (S) 0 Complete and duplicated BUSCOs (D) 0 Fragmented BUSCOs (F) 1440 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/PW363/n_VdnPW9.fasta -o BUSCOtran.n_VdnPW9.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/PW363/n_VdnPW9.fasta # BUSCO was run in mode: transcriptome C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1440 0 Complete BUSCOs (C) 0 Complete and single-copy BUSCOs (S) 0 Complete and duplicated BUSCOs (D) 0 Fragmented BUSCOs (F) 1440 Missing BUSCOs (M) 1440 Total BUSCO groups searched
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Created: 10th Nov 2019 at 23:06
Last updated: 10th Nov 2019 at 23:06
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Version 1 (earliest) Created 10th Nov 2019 at 23:06 by Andrej Blejec
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Projects: testUpload, Test project 2019-10-30 11:13:00, Test project 2019-10-30 11:09:39, Test project 2019-11-02 19:40:30, Test project for pISA (104), _p_stRT, _p_Demo, Bla, Test project abcd, Test project 2021-07-18 22:00:39, Test project 2021-07-18 22:45:54, Test project 2021-07-18 23:08:33, Test project 2021-07-18 23:23:02, Test project 2021-07-21 00:08:04, Test project 2021-07-21 00:17:06, Test project 2021-07-21 00:18:25, Test project 2021-08-20 22:56:43, Testing of upload, _p_RNAinVAL
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Investigation: _I_STRT\n Short Name: STRT\n Title: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Phenodata: ./phenodata_20191022.txt pISA Investigation creation date: 2019-10-22 pISA Investigation creator: Maja Zagorscak Principal investigator: Kristina Gruden License: GPL-3 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: _S_01_sequences, _S_02_denovo, _S_03_stCuSTr, _S_04_stPanTr
Assays: _A_01_evigene, _A_01_evigene_1_3cvs-gffmerged, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_02_components_1_3cvs-gffmerged, _A_03.1_filtering, _A_03.2_components, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_04_TransRate, _A_05_BUSCO, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_01_sequences-files, _A__S_02_denovo-files, _A__S_03_stCuSTr-files, _A__S_04_stPanTr-files
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No description specified
Submitter: Andrej Blejec
Investigation: _I_STRT-1
Assays: _A_01_evigene, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_03.1_filtering, _A_03.2_components, _A_04_TransRate, _A_05_BUSCO, _A__S_03_stCuSTr-files
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BUSCO on assemblies and tr2aacds output BUSCO on assemblies and tr2aacds output
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: _I_STRT-1
Study: _S_03_stCuSTr
