/output/PW363_repAlt.txt Version 1
_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.1_BUSCO
SEEK ID: https://testing.sysmo-db.org/data_files/1151?version=1
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output/PW363_repAlt.txt
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# BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../_A_01_evigene/output/PW363.aa.fasta -o BUSCO.PW363.all_2018-06-07 -l ../../../../../../buscoDB/embryophyta_odb9/ -m proteins -c 2 # # Summarized benchmarking in BUSCO notation for file ../../_A_01_evigene/output/PW363.aa.fasta # BUSCO was run in mode: proteins C:91.6%[S:39.9%,D:51.7%],F:2.9%,M:5.5%,n:1440 1318 Complete BUSCOs (C) 574 Complete and single-copy BUSCOs (S) 744 Complete and duplicated BUSCOs (D) 42 Fragmented BUSCOs (F) 80 Missing BUSCOs (M) 1440 Total BUSCO groups searched
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Created: 13th Nov 2019 at 22:26
Last updated: 13th Nov 2019 at 22:26
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Version 1 (earliest) Created 13th Nov 2019 at 22:26 by Andrej Blejec
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Institutions: National Institute of Biology, NIB, <script>alert('xss-institution-title')</script> & Test Institution
https://orcid.org/0000-0001-7484-6031
Local data management; testing uploading/downloading using API
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Web page: Not specified
Investigation: _I_STRT\n Short Name: STRT\n Title: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Phenodata: ./phenodata_20191022.txt pISA Investigation creation date: 2019-10-22 pISA Investigation creator: Maja Zagorscak Principal investigator: Kristina Gruden License: GPL-3 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: _S_01_sequences, _S_02_denovo, _S_03_stCuSTr, _S_04_stPanTr
Assays: _A_01_evigene, _A_01_evigene_1_3cvs-gffmerged, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_02_components_1_3cvs-gffmerged, _A_03.1_filtering, _A_03.2_components, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_04_TransRate, _A_05_BUSCO, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_01_sequences-files, _A__S_02_denovo-files, _A__S_03_stCuSTr-files, _A__S_04_stPanTr-files
Submitter: Andrej Blejec
Investigation: _I_STRT-1
Assays: _A_01_evigene, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_03.1_filtering, _A_03.2_components, _A_04_TransRate, _A_05_BUSCO, _A__S_03_stCuSTr-files
BUSCO on assemblies and tr2aacds output BUSCO on assemblies and tr2aacds output
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: _I_STRT-1
Study: _S_03_stCuSTr
