Assays

829 Assays visible to you, out of a total of 1136

_p_stRT

Short Name: 08_centrifuge_3cvs-GFFmerged Assay Class: DRY Assay Type: GFFmerged Title: Centrigufe pan-transcriptome sequence classification Description: Classify cv rep transcripts and pan-transcriptome singletons based on taxonomy pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /intermediate/trueSingle.DM.cds.fasta, /intermediate/trueSingle.polyploid.cds.fasta, /intermediate/trueSingle.polyploid.tr.fasta, /output/PW363_report.txt, /output/trueSingle.polyploid.tr_kreport.txt

Snapshots: No snapshots

Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:31

_A_07_Desiree-mapping

_p_stRT

Short Name: 07_Desiree-mapping Assay Class: DRY Assay Type: mapping Title: Desiree mapping Description: Mapping of Desiree samples (drought stress) to Desiree and Phureja transcriptomes pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /intermediate/Desiree/genomeParameters.txt, /intermediate/PGSC/chrName.txt, /intermediate/PGSC/chrNameLength.txt, /intermediate/gff-merged/chrName.txt, /intermediate/indexGFFmerged.log, /output/Desiree_SRR10416847/Log.final.out, /output/Desiree_SRR10416848/Log.final.out, /output/Desiree_SRR10416849/Log.progress.out, /output/Desiree_SRR10416849/Log.progress.out, /output/Desiree_drought123/Log.out, /output/PGSC_SRR10416848/Log.final.out, /output/PGSC_SRR10416849/Log.out, /output/PGSC_drought123/Log.out, /output/PGSC_drought123/Log.progress.out, /output/gff-merged_SRR10416847/Log.out, /output/gff-merged_SRR10416847/Log.progress.out, /output/gff-merged_SRR10416849/Log.final.out

Snapshots: No snapshots

Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 17:31

_A_06_tr_rep-transrate

_p_stRT

Short Name: 06_tr_rep-transrate Assay Class: DRY Assay Type: transrate Title: Cultivar representative transcriptome transrate Description: Transrate on cultivar specific representatives, GFF merged as a reference for CRRB pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /output/PGSC_DM_v3.4_transcript-update_represen..., /output/PGSC_DM_v3.4_transcript-update_represen..., /output/stCuSTr-P_tr_representatives_transrate_..., /output/stCuSTr-P_tr_representatives_transrate_..., /output/stCuSTr-R_tr_representatives_transrate_..., /output/stCuSTr-R_tr_representatives_transrate_...

Snapshots: No snapshots

Created: 13th May 2021 at 11:38, Last updated: 13th May 2021 at 17:28

Carnivorous Plant Max Load Digestion Time

Mass Analysis of Plant Nutrition.

This updated assay pertains to the maximum load of a variety of carnivorous plants in comparison to the digestion time of said plants. It has been added to through a Jupyter Notebook.

Submitter: Grey Muir

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Investigation into how Plant Nutrition may be I...

Study: Study into Carnivorous Plants

Organisms: No organisms

SOPs: No SOPs

Data files: Carnivorous Plant Conclusion, Carnivorous Plant Conclusion, Carnivorous Plant Weight Results, Graph of Carnivorous Plant Data, Graph of avg. Weight of Plant against Consumpti..., Graph of avg. Weight of Plant against Consumpti..., Uploaded Graph of avg. Weight of Plant against ..., fly trap

Snapshots: No snapshots

Created: 29th Mar 2021 at 06:14, Last updated: 10th May 2021 at 13:50

Assay with one strain

SysMO DB