/intermediate/indexGFFmerged.log

Version 1

STAR version=2.7.3a
STAR compilation time,server,dir=Tue Oct 8 14:26:19 EDT 2019 vega:/home/dobin/data/STAR/STARcode/STAR.master/source
##### Command Line:
STAR --runThreadN 30 --runMode genomeGenerate --genomeDir ../intermediate/gff-merged/ --genomeFastaFiles ../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta --limitGenomeGenerateRAM=242371378560
##### Initial USER parameters from Command Line:
###### All USER parameters from Command Line:
runThreadN                    30     ~RE-DEFINED
runMode                       genomeGenerate     ~RE-DEFINED
genomeDir                     ../intermediate/gff-merged/     ~RE-DEFINED
genomeFastaFiles              ../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta        ~RE-DEFINED
limitGenomeGenerateRAM        242371378560     ~RE-DEFINED
##### Finished reading parameters from all sources

##### Final user re-defined parameters-----------------:
runMode                           genomeGenerate
runThreadN                        30
genomeDir                         ../intermediate/gff-merged/
genomeFastaFiles                  ../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta   
limitGenomeGenerateRAM            242371378560

-------------------------------
##### Final effective command line:
STAR   --runMode genomeGenerate   --runThreadN 30   --genomeDir ../intermediate/gff-merged/   --genomeFastaFiles ../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta      --limitGenomeGenerateRAM 242371378560
----------------------------------------

Finished loading and checking parameters
Feb 05 11:50:44 ... starting to generate Genome files
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 0  "PGSC0003DMT400000002" chrStart: 0
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 1  "PGSC0003DMT400000009" chrStart: 262144
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 2  "PGSC0003DMT400000019" chrStart: 524288
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 3  "PGSC0003DMT400000024" chrStart: 786432
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 4  "PGSC0003DMT400000025" chrStart: 1048576
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 5  "PGSC0003DMT400000060" chrStart: 1310720
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 6  "PGSC0003DMT400000061" chrStart: 1572864
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 7  "PGSC0003DMT400000080" chrStart: 1835008
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8  "PGSC0003DMT400000086" chrStart: 2097152
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 9  "PGSC0003DMT400000108" chrStart: 2359296
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 10  "PGSC0003DMT400000120" chrStart: 2621440
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 11  "PGSC0003DMT400000123" chrStart: 2883584
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 12  "PGSC0003DMT400000126" chrStart: 3145728
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 13  "PGSC0003DMT400000129" chrStart: 3407872
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 14  "PGSC0003DMT400000156" chrStart: 3670016
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 15  "PGSC0003DMT400000167" chrStart: 3932160
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 16  "PGSC0003DMT400000170" chrStart: 4194304
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 17  "PGSC0003DMT400000194" chrStart: 4456448
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 18  "PGSC0003DMT400000205" chrStart: 4718592
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 19  "PGSC0003DMT400000240" chrStart: 4980736
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 20  "PGSC0003DMT400000252" chrStart: 5242880
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 21  "PGSC0003DMT400000254" chrStart: 5505024
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 22  "PGSC0003DMT400000256" chrStart: 5767168
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 23  "PGSC0003DMT400000286" chrStart: 6029312
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 24  "PGSC0003DMT400000287" chrStart: 6291456
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 25  "PGSC0003DMT400000299" chrStart: 6553600
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 26  "PGSC0003DMT400000313" chrStart: 6815744
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 27  "PGSC0003DMT400000320" chrStart: 7077888
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 28  "PGSC0003DMT400000330" chrStart: 7340032
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 29  "PGSC0003DMT400000331" chrStart: 7602176
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 30  "PGSC0003DMT400000339" chrStart: 7864320
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 31  "PGSC0003DMT400000343" chrStart: 8126464
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 32  "PGSC0003DMT400000349" chrStart: 8388608
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 33  "PGSC0003DMT400000351" chrStart: 8650752
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 34  "PGSC0003DMT400000378" chrStart: 8912896
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 35  "PGSC0003DMT400000441" chrStart: 9175040
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 36  "PGSC0003DMT400000448" chrStart: 9437184
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 37  "PGSC0003DMT400000483" chrStart: 9699328
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 38  "PGSC0003DMT400000489" chrStart: 9961472
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 39  "PGSC0003DMT400000510" chrStart: 10223616
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 40  "PGSC0003DMT400000512" chrStart: 10485760
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 41  "PGSC0003DMT400000565" chrStart: 10747904
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 42  "PGSC0003DMT400000570" chrStart: 11010048
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 43  "PGSC0003DMT400000571" chrStart: 11272192
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 44  "PGSC0003DMT400000585" chrStart: 11534336
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 45  "PGSC0003DMT400000600" chrStart: 11796480
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 48  "PGSC0003DMT400000660" chrStart: 12582912
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 49  "PGSC0003DMT400000676" chrStart: 12845056
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 50  "PGSC0003DMT400000679" chrStart: 13107200
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 51  "PGSC0003DMT400000700" chrStart: 13369344
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 52  "PGSC0003DMT400000701" chrStart: 13631488
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 54  "PGSC0003DMT400000704" chrStart: 14155776
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 57  "PGSC0003DMT400000708" chrStart: 14942208
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 67  "PGSC0003DMT400000793" chrStart: 17563648
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 88  "PGSC0003DMT400001061" chrStart: 23068672
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 89  "PGSC0003DMT400001124" chrStart: 23330816
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 112  "PGSC0003DMT400001491" chrStart: 29360128
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 113  "PGSC0003DMT400001495" chrStart: 29622272
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 115  "PGSC0003DMT400001555" chrStart: 30146560
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 116  "PGSC0003DMT400001574" chrStart: 30408704
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 118  "PGSC0003DMT400001583" chrStart: 30932992
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 119  "PGSC0003DMT400001585" chrStart: 31195136
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 5846  "PGSC0003DMT400054013" chrStart: 1532493824
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../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8340  "PGSC0003DMT400077234" chrStart: 2186280960
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8341  "PGSC0003DMT400077237" chrStart: 2186543104
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8342  "PGSC0003DMT400077239" chrStart: 2186805248
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8343  "PGSC0003DMT400077241" chrStart: 2187067392
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8344  "PGSC0003DMT400077243" chrStart: 2187329536
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8345  "PGSC0003DMT400077249" chrStart: 2187591680
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8346  "PGSC0003DMT400077252" chrStart: 2187853824
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8347  "PGSC0003DMT400077254" chrStart: 2188115968
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8348  "PGSC0003DMT400077256" chrStart: 2188378112
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8349  "PGSC0003DMT400077258" chrStart: 2188640256
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-cds_gff-2019-04-23.fasta : chr # 8350  "PGSC0003DMT400077263" chrStart: 2188902400
../input/StPGSC4.04n_seq_2_PGSC-t-rep_ITAG-c

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