Assays

What is an Assay?

827 Assays visible to you, out of a total of 1123

Test assay 2021-07-18 23:19:28

Test project 2021-07-18 23:08:33

Testing upload

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test investigation 2021-07-18 23:15:49

Study: Test study 2021-07-18 23:18:51

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th Jul 2021 at 21:19

Test assay 2019-11-04 13:40:46

Test project for pISA (104)

Testing of upload

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test investigation 2019-11-02 22:39:24

Study: Test study 2019-11-04 13:40:44

Organisms: No organisms

SOPs: No SOPs

Snapshots: No snapshots

Created: 4th Nov 2019 at 13:23, Last updated: 12th Jul 2021 at 16:30

Test assay 2021-07-12 18:29:24

Test project for pISA (104)

Testing of upload

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test investigation 2019-11-02 22:39:24

Study: Test study 2021-07-12 18:28:48

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 12th Jul 2021 at 16:29

Excel template for metabolomics data

SysMO DB

Dear SEEK users, this Assay is just an example Excell sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat

Submitter: Olga Krebs

Assay type: Amplification

Technology type: Mass Spectrometry

Investigation: Methods for interrelating 'omics data

Study: Metabolomics data capture

Organisms: Callimico goeldii

SOPs: new sop

Data files: Excell sheet template : concentrations of intra..., Treatments Test 1, Umlaut in sheet names from Excel, Umlaut only in cells, a_transcriptome from BII-S-1, test plot data

Snapshots: No snapshots

Created: 10th Jun 2009 at 17:22, Last updated: 23rd Jun 2021 at 12:40

_A_09_annotation-GFFmerged

_p_stRT

Short Name: 09_annotation-GFFmerged Assay Class: DRY Assay Type: GFFmerged Title: Pan-transcriptome fasta files annotation Description: Annotation of pan-transcriptome and re-annotation of cultivar-specific transcriptomes pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /output/annot_stCuSTr-D_aa_alternatives.zip, /output/annot_stCuSTr-D_cds_all.zip, /output/annot_stCuSTr-D_tr_all.zip, /output/annot_stCuSTr-P_aa_all.zip, /output/annot_stCuSTr-P_cds_all.zip, /output/annot_stCuSTr-P_tr_all.zip, /output/annot_stPanTr.aa.zip, /output/annot_stPanTr_alt.aa.zip, /scripts/annotate.sh

Snapshots: No snapshots

Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 17:31

_A_08_centrifuge_3cvs-GFFmerged

_p_stRT

Short Name: 08_centrifuge_3cvs-GFFmerged Assay Class: DRY Assay Type: GFFmerged Title: Centrigufe pan-transcriptome sequence classification Description: Classify cv rep transcripts and pan-transcriptome singletons based on taxonomy pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /intermediate/trueSingle.DM.cds.fasta, /intermediate/trueSingle.polyploid.cds.fasta, /intermediate/trueSingle.polyploid.tr.fasta, /output/PW363_report.txt, /output/trueSingle.polyploid.tr_kreport.txt

Snapshots: No snapshots

Created: 13th May 2021 at 17:28, Last updated: 13th May 2021 at 17:31

_A_07_Desiree-mapping

_p_stRT

Short Name: 07_Desiree-mapping Assay Class: DRY Assay Type: mapping Title: Desiree mapping Description: Mapping of Desiree samples (drought stress) to Desiree and Phureja transcriptomes pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /intermediate/Desiree/genomeParameters.txt, /intermediate/PGSC/chrName.txt, /intermediate/PGSC/chrNameLength.txt, /intermediate/gff-merged/chrName.txt, /intermediate/indexGFFmerged.log, /output/Desiree_SRR10416847/Log.final.out, /output/Desiree_SRR10416848/Log.final.out, /output/Desiree_SRR10416849/Log.progress.out, /output/Desiree_SRR10416849/Log.progress.out, /output/Desiree_drought123/Log.out, /output/PGSC_SRR10416848/Log.final.out, /output/PGSC_SRR10416849/Log.out, /output/PGSC_drought123/Log.out, /output/PGSC_drought123/Log.progress.out, /output/gff-merged_SRR10416847/Log.out, /output/gff-merged_SRR10416847/Log.progress.out, /output/gff-merged_SRR10416849/Log.final.out

Snapshots: No snapshots

Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 17:31

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