Assays

What is an Assay?

829 Assays visible to you, out of a total of 1136

Test assay 2021-07-18 23:23:25

Test project 2021-07-18 23:23:02

Testing upload

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test investigation 2021-07-18 23:23:20

Study: Test study 2021-07-18 23:23:23

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th Jul 2021 at 21:23, Last updated: 19th Aug 2021 at 07:47

_p_stRT

BUSCO on assemblies and tr2aacds output BUSCO on assemblies and tr2aacds output

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_03_stCuSTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /input/path_to_files.txt, /input/path_to_files.txt, /output/Desiree_assemblies.txt, /output/Desiree_assemblies.txt, /output/Desiree_repAlt.txt, /output/Desiree_repAlt.txt, /output/PW363_assemblies.txt, /output/PW363_assemblies.txt, /output/PW363_repAlt.txt, /output/PW363_repAlt.txt, /output/Rywal_assemblies.txt, /output/Rywal_rep.aa.txt, /output/Rywal_rep.aa.txt, /output/Rywal_rep.tr.txt, /output/Rywal_rep.tr.txt, /output/Rywal_repAlt.txt, /output/Rywal_repAlt.txt, /scripts/00_get_tools_and_export_paths.txt, /scripts/00_get_tools_and_export_paths.txt, /scripts/01_run_BUSCO.sh, /scripts/01_run_BUSCO.sh

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:06, Last updated: 19th Aug 2021 at 07:43

Test assay 2021-07-18 23:19:28

Test project 2021-07-18 23:08:33

Testing upload

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test investigation 2021-07-18 23:15:49

Study: Test study 2021-07-18 23:18:51

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 18th Jul 2021 at 21:19

Test assay 2019-11-04 13:40:46

Test project for pISA (104)

Testing of upload

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test investigation 2019-11-02 22:39:24

Study: Test study 2019-11-04 13:40:44

Organisms: No organisms

SOPs: No SOPs

Data files: /input/README.M, /input/README.MD, /input/README.MD, /input/README.MD, /input/README.MD, /input/README.MD, NA.txt, NA.txt, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD, input/README.MD 1, input/README.MD 1

Snapshots: No snapshots

Created: 4th Nov 2019 at 13:23, Last updated: 12th Jul 2021 at 16:30

Test assay 2021-07-12 18:29:24

Test project for pISA (104)

Testing of upload

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: Test investigation 2019-11-02 22:39:24

Study: Test study 2021-07-12 18:28:48

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 12th Jul 2021 at 16:29

Excel template for metabolomics data

SysMO DB

Dear SEEK users, this Assay is just an example Excell sheet for intracellular metabolites concentration measurements performed using cell culture growing in chemostat

.

Submitter: Olga Krebs

Assay type: Amplification

Technology type: Mass Spectrometry

Investigation: Methods for interrelating 'omics data

Study: Metabolomics data capture

Organisms: Callimico goeldii

SOPs: new sop

Data files: Excell sheet template : concentrations of intra..., Treatments Test 1, Umlaut in sheet names from Excel, Umlaut only in cells, a_transcriptome from BII-S-1, test plot data

Snapshots: No snapshots

Created: 10th Jun 2009 at 17:22, Last updated: 23rd Jun 2021 at 12:40

_A_09_annotation-GFFmerged

_p_stRT

Short Name: 09_annotation-GFFmerged Assay Class: DRY Assay Type: GFFmerged Title: Pan-transcriptome fasta files annotation Description: Annotation of pan-transcriptome and re-annotation of cultivar-specific transcriptomes pISA Assay creation date: 2020-03-11 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /output/annot_stCuSTr-D_aa_alternatives.zip, /output/annot_stCuSTr-D_cds_all.zip, /output/annot_stCuSTr-D_tr_all.zip, /output/annot_stCuSTr-P_aa_all.zip, /output/annot_stCuSTr-P_cds_all.zip, /output/annot_stCuSTr-P_tr_all.zip, /output/annot_stPanTr.aa.zip, /output/annot_stPanTr_alt.aa.zip, /scripts/annotate.sh

Snapshots: No snapshots

Created: 13th May 2021 at 11:56, Last updated: 13th May 2021 at 17:31

(v.1.16.0-pre)

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