/intermediate/BUSCOall_embryophyta_odb9.tsv Version 1
_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_BUSCO-Stat
SEEK ID: https://testing.sysmo-db.org/data_files/1130?version=1
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intermediate/BUSCOall_embryophyta_odb9.tsv
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short_summary_BUSCO_D_all_pre_cdhit-2d.aa_embryophyta_odb9 544 Complete and single-copy BUSCOs (S) 852 Complete and duplicated BUSCOs (D) 18 Fragmented BUSCOs (F) 26 Missing BUSCOs (M) short_summary_BUSCO_P_all_pre_cdhit-2d.aa_embryophyta_odb9 564 Complete and single-copy BUSCOs (S) 737 Complete and duplicated BUSCOs (D) 49 Fragmented BUSCOs (F) 90 Missing BUSCOs (M) short_summary_BUSCO_R_all_pre_cdhit-2d.aa_embryophyta_odb9 803 Complete and single-copy BUSCOs (S) 501 Complete and duplicated BUSCOs (D) 37 Fragmented BUSCOs (F) 99 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-D_aa_utrorf.fasta_embryophyta_odb9 8 Complete and single-copy BUSCOs (S) 1 Complete and duplicated BUSCOs (D) 1 Fragmented BUSCOs (F) 1430 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-P_aa_utrorf.fasta_embryophyta_odb9 12 Complete and single-copy BUSCOs (S) 2 Complete and duplicated BUSCOs (D) 4 Fragmented BUSCOs (F) 1422 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-R_aa_utrorf.fasta_embryophyta_odb9 12 Complete and single-copy BUSCOs (S) 0 Complete and duplicated BUSCOs (D) 3 Fragmented BUSCOs (F) 1425 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-D_aa_alternatives_eliminated.fasta_embryophyta_odb9 20 Complete and single-copy BUSCOs (S) 17 Complete and duplicated BUSCOs (D) 17 Fragmented BUSCOs (F) 1386 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-P_aa_alternatives_eliminated.fasta_embryophyta_odb9 29 Complete and single-copy BUSCOs (S) 12 Complete and duplicated BUSCOs (D) 25 Fragmented BUSCOs (F) 1374 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-R_aa_alternatives_eliminated.fasta_embryophyta_odb9 22 Complete and single-copy BUSCOs (S) 2 Complete and duplicated BUSCOs (D) 7 Fragmented BUSCOs (F) 1409 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-D_aa_all.fasta_embryophyta_odb9 539 Complete and single-copy BUSCOs (S) 841 Complete and duplicated BUSCOs (D) 20 Fragmented BUSCOs (F) 40 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-P_aa_all.fasta_embryophyta_odb9 553 Complete and single-copy BUSCOs (S) 733 Complete and duplicated BUSCOs (D) 51 Fragmented BUSCOs (F) 103 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-R_aa_all.fasta_embryophyta_odb9 794 Complete and single-copy BUSCOs (S) 499 Complete and duplicated BUSCOs (D) 39 Fragmented BUSCOs (F) 108 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-D_aa_representatives.fasta_embryophyta_odb9 1294 Complete and single-copy BUSCOs (S) 69 Complete and duplicated BUSCOs (D) 34 Fragmented BUSCOs (F) 43 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-P_aa_representatives.fasta_embryophyta_odb9 1211 Complete and single-copy BUSCOs (S) 58 Complete and duplicated BUSCOs (D) 64 Fragmented BUSCOs (F) 107 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-R_aa_representatives.fasta_embryophyta_odb9 1250 Complete and single-copy BUSCOs (S) 38 Complete and duplicated BUSCOs (D) 42 Fragmented BUSCOs (F) 110 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-D_aa_alternatives.fasta_embryophyta_odb9 575 Complete and single-copy BUSCOs (S) 418 Complete and duplicated BUSCOs (D) 155 Fragmented BUSCOs (F) 292 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-P_aa_alternatives.fasta_embryophyta_odb9 499 Complete and single-copy BUSCOs (S) 390 Complete and duplicated BUSCOs (D) 191 Fragmented BUSCOs (F) 360 Missing BUSCOs (M) short_summary_BUSCO_stCuSTr-R_aa_alternatives.fasta_embryophyta_odb9 486 Complete and single-copy BUSCOs (S) 126 Complete and duplicated BUSCOs (D) 117 Fragmented BUSCOs (F) 711 Missing BUSCOs (M)
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Created: 10th Nov 2019 at 23:23
Last updated: 10th Nov 2019 at 23:23
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Version 1 (earliest) Created 10th Nov 2019 at 23:23 by Andrej Blejec
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Institutions: National Institute of Biology, NIB, <script>alert('xss-institution-title')</script> & Test Institution
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Web page: Not specified
Investigation: _I_STRT\n Short Name: STRT\n Title: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Description: Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato Phenodata: ./phenodata_20191022.txt pISA Investigation creation date: 2019-10-22 pISA Investigation creator: Maja Zagorscak Principal investigator: Kristina Gruden License: GPL-3 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: _S_01_sequences, _S_02_denovo, _S_03_stCuSTr, _S_04_stPanTr
Assays: _A_01_evigene, _A_01_evigene_1_3cvs-gffmerged, _A_02.1_BUSCO, _A_02.2_assembly-contribution-count, _A_02.2_assembly-contribution-count, _A_02.3_InterProScan, _A_02.4_STAR, _A_02.5_STARlong_matchAnnot, _A_02.6_TransRate, _A_02.7_VecScreen, _A_02.8_DIAMOND, _A_02_components_1_3cvs-gffmerged, _A_03.1_filtering, _A_03.2_components, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_04_TransRate, _A_05_BUSCO, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_01_sequences-files, _A__S_02_denovo-files, _A__S_03_stCuSTr-files, _A__S_04_stPanTr-files
/transfer/evg_out.tsv _p_stRT/_I_STRT/_S_03_stCuSTr/_A_05_BUSCO
Submitter: Andrej Blejec
Investigation: _I_STRT-1
Assays: _A_01_evigene_1_3cvs-gffmerged, _A_02_components_1_3cvs-gffmerged, _A_03_BUSCO_1_3cvs-gffmerged, _A_04-MSA, _A_05_BUSCO-Stat, _A_05_BUSCO-Stat-old, _A__S_04_stPanTr-files
BUSCO plots BUSCO plots
Submitter: Andrej Blejec
Biological problem addressed: Model Analysis Type
Investigation: _I_STRT-1
Study: _S_04_stPanTr
