scripts/50aa_one-gene-plots.Rnw
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SEEK ID: https://testing.sysmo-db.org/documents/552?version=1

Filename: scripts/50aa_one-gene-plots.Rnw

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% -*- TeX:Rnw:UTF-8 -*-
% ----------------------------------------------------------------
% .R knitr file  ************************************************
% ----------------------------------------------------------------
%%
<<echo=FALSE>>=
###############################################
##                                           ##
## (c) Andrej Blejec (andrej.blejec@nib.si)  ##
##                                           ##
###############################################
@
<<echo=FALSE,results='hide'>>=
options(width=70)
@

\clearpage
\subsubsection{\Sexpr{varname}}

<<>>=
cat.feature(fdata[fdata$geneID %in% varname,2:5])
@

Coefficients  for \Sexpr{varname}.

<<echo=FALSE>>=
tt[varname,]

@


<<echo=FALSE>>=
opts_chunk$set( fig.path=paste0('./figs/50-',varname) )
@

<<echo=FALSE>>=
#par(mfrow=c(2,3))
#
#plot.wpe(varname,model="")
#plot.wpe(varname,model="+")
#plot.wpe(varname,model="*")
a <- plot.ewp(varname,model="", , exprs=exprs, pd=pd, ylim=range(exprs)
     , cex= 1.5
     , pch = c(16,16)
     )
#plot.ewp(varname,model="+")
#plot.ewp(varname,model="*")
#r2 <- summary(fits[["all"]])$r.squared
@

<<echo=FALSE>>=
opts_chunk$set( fig.path='./figs/' )
@




<<>>=
@

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