scripts/40aa_one-gene-plots.Rnw Version 1
_p_VinskaTrta/_I_EnViRoS/_S_01_Integ/_A_01_Desc-R/
SEEK ID: https://testing.sysmo-db.org/documents/549?version=1
Filename:
scripts/40aa_one-gene-plots.Rnw
Format: Plain text document
Size: 875 Bytes
% -*- TeX:Rnw:UTF-8 -*-
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% .R knitr file ************************************************
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<<echo=FALSE>>=
###############################################
## ##
## (c) Andrej Blejec (andrej.blejec@nib.si) ##
## ##
###############################################
@
<<echo=FALSE,results='hide'>>=
options(width=70)
@
\clearpage
\subsubsection{\Sexpr{varname}}
Coefficient \Sexpr{cname} for \Sexpr{varname}.
<<>>=
par(mfrow=c(2,3))
#
plot.wpe(varname,model="")
plot.wpe(varname,model="+")
plot.wpe(varname,model="*")
plot.ewp(varname,model="")
plot.ewp(varname,model="+")
plot.ewp(varname,model="*")
@
<<>>=
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Creators and Submitter
Views: 846 Downloads: 45
Created: 7th Nov 2021 at 15:25
Last updated: 7th Nov 2021 at 15:25
AttributionsNone
Version History
Version 1 (earliest) Created 7th Nov 2021 at 15:25 by Andrej Blejec
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Institutions: National Institute of Biology, NIB, <script>alert('xss-institution-title')</script> & Test Institution
https://orcid.org/0000-0001-7484-6031
Local data management; testing uploading/downloading using API
Projects: testUpload, *, New project, New project 1, Test Project 7, Test Project, Test Project 8, Test Project 9, Test Project 10, Test Project 11, Test Project 12, Test Project 14, Test Project 13, Test Project 15, Test Project 16, Test Project 17, Test Project 18, Test: investigations 2019-10-30 11:00:08, Test: investigations 2019-10-30 11:02:00, Test project 2019-10-30 11:04:02, Test project 2019-10-30 11:08:47, Test project 2019-10-30 11:09:39, Test project 2019-10-30 11:10:03, Test project 2019-10-30 11:13:00, Test project 2019-11-01 11:41:43, Test project 2019-11-01 11:44:23, Test Project 20, Test project 21 2019-11-01 11:44:23, Test Project 21, Test project 23 2019-11-01 11:44:23, Test project 24 2019-11-01 11:44:23, Test project 33 2019-11-01 11:57:55, Test project 2019-11-01 12:01:35, Test project 40 2019-11-01 11:57:55, Test project 41 2019-11-01 11:57:55, Test project 42 2019-11-01 11:57:55, Test project 43 2019-11-01 11:57:55, Test project 44 2019-11-01 11:57:55, Test project 47 2019-11-01 11:57:55, Test project 48 2019-11-01 11:57:55, Test project 2019-11-01 19:36:07, Test project 2019-11-02 19:35:45, Test project 2019-11-02 19:40:30, Test project 50 2019-11-01 11:57:55, Test project 2019-11-02 19:47:45, Test project 51 2019-11-01 11:57:55, Test project 2019-11-02 20:22:36, Test project 2019-11-02 22:06:58, Test project 2019-11-02 22:10:04, Test project for pISA (104), _p_stRT, Test project 2019-11-13 21:46:46, Test project 2019-11-13 21:57:39, Test project 2019-11-13 21:59:51, Test project 2021-07-12 18:25:58, _p_Demo, Bla, Test project 2021-07-14 20:52:52, Test project 2021-07-14 20:54:23, Test project 2021-07-14 20:57:21, Test project 2021-07-15 23:13:46, Test project 2021-07-15 23:14:58, Test project 2021-07-15 23:16:29, Test project 2021-07-16 18:42:56, Test project 2021-07-16 18:43:56, Test project 2021-07-16 18:58:32, Test project 2021-07-16 19:00:28, Test project 2021-07-16 19:14:43, Test project 2021-07-16 19:17:03, Test project 2021-07-16 20:07:34, Test project 2021-07-17 20:31:23, Test project 2021-07-17 20:49:21, Test project abc, Test project abcd, Test project abcde, Test project 2021-07-18 21:54:46, Test project 2021-07-18 22:00:39, Test project 2021-07-18 23:08:33, Test project 2021-07-18 23:23:02, Test project 2021-07-21 00:08:04, Test project 2021-07-21 00:17:06, Test project 2021-07-21 00:18:25, Test project 2021-08-20 22:56:43, Testing of upload, _p_RNAinVAL
Web page: Not specified
This is a demo project used for the demonstration of R package seekr functionality. R package seekr is based on SEEKR-API and enables batch upload of files organized in pISA-tree structure.
Programme: pISA-tree
Public web page: https://github.com/NIB-SI/seekr
Investigation: _I_EnViRoS Short Name: EnViRoS Title: Integration of data from different platforms Description: * Phenodata: ./phenodata_20201113.txt pISA Investigation creation date: 2020-11-13 pISA Investigation creator: AB Principal investigator: * License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Studies: Investigation files, _S_01_Integ
Assays: _A_01_Desc-R, _A_02_Upload-R, _I_EnViRoS-files, _S_01_Integ-files
Study: _S_01_Integ Short Name: 01_Integ Title: * Description: * Raw Data: pISA Study creation date: 2020-11-13 pISA Study creator: AB Principal investigator: * License: CC BY 4.0 Sharing permission: Private Upload to FAIRDOMHub: Yes
Submitter: Andrej Blejec
Investigation: _I_EnViRoS | 2021-11-07 16:20:23
Assays: _A_01_Desc-R, _A_02_Upload-R, _S_01_Integ-files
Assay: _A_01_Desc-R Short Name: 01_Desc-R Assay Class: DRY Assay Type: R Title: Data overview and descriptive statistical presentation Description: First we will organize the data and perfom preliminary data analyses to overview what we have. pISA Assay creation date: 2020-11-13 pISA Assay creator: Andrej Blejec Analyst: Andrej Blejec Phenodata: Phenodata_20201109.txt Featuredata: Transcripts1819-02.txt Featuredata metabolites: Featuredata_metabolites_210127.txt Transcript data 18: /input/Transcripts ...
Submitter: Andrej Blejec
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: _I_EnViRoS | 2021-11-07 16:20:23
Study: _S_01_Integ
