study source

No description specified

Attributes

Name	Type	Description	PID	Unit
Source Name*	String	Sources are considered as the starting biological material used in a study.	-	-
organism*	Controlled Vocabulary - organism (free text allowed)	A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. E.g Drosophila melanogaster.	http://purl.obolibrary.org/obo/OBI_0100026	-
organism part*	Controlled Vocabulary - organism part (free text allowed)	The part of organism's anatomy or substance arising from an organism from which the biomaterial was derived, excludes cells. E.g. tissue, organ, system, sperm, blood or body location (arm).	http://www.ebi.ac.uk/efo/EFO_0000635	-
developmental stage*	Controlled Vocabulary - developmental stage (free text allowed)	A developmental stage is spatiotemporal region encompassing some part of the life cycle of an organism, e.g. blastula stage	http://www.ebi.ac.uk/efo/EFO_0000399	-
age*	Controlled Vocabulary - age (free text allowed)	A temporal measurement of the time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting).	http://www.ebi.ac.uk/efo/EFO_0000246	-
genotype*	Controlled Vocabulary - genotype (free text allowed)	The total sum of the genetic information of an organism that is known and relevant to the experiment being performed, including chromosomal, plasmid, viral or other genetic material which has been introduced into the organism either prior to or during the experiment.	http://www.ebi.ac.uk/efo/EFO_0000513	-
cultivar*	String	A cultivated plant variety selected and given a name because it has desirable characteristics that distinguish it from otherwise similar plants of the same species.	http://www.ebi.ac.uk/efo/EFO_0005136	-
material type*	Controlled Vocabulary - material type (free text allowed)	Used as an attribute column following Source Name, Sample Name, Extract Name, or Labeled Extract Name. This column contains terms describing the type of each material, for examples: whole organism, organism part, cell, total RNA.	-	-

Name

Type

Description

PID

Unit

Source Name*

String

Sources are considered as the starting biological material used in a study.

organism*

Controlled Vocabulary - organism (free text allowed)

A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. E.g Drosophila melanogaster.

http://purl.obolibrary.org/obo/OBI_0100026

organism part*

Controlled Vocabulary - organism part (free text allowed)

The part of organism's anatomy or substance arising from an organism from which the biomaterial was derived, excludes cells. E.g. tissue, organ, system, sperm, blood or body location (arm).

http://www.ebi.ac.uk/efo/EFO_0000635

developmental stage*

Controlled Vocabulary - developmental stage (free text allowed)

A developmental stage is spatiotemporal region encompassing some part of the life cycle of an organism, e.g. blastula stage

http://www.ebi.ac.uk/efo/EFO_0000399

age*

Controlled Vocabulary - age (free text allowed)

A temporal measurement of the time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting).

http://www.ebi.ac.uk/efo/EFO_0000246

genotype*

Controlled Vocabulary - genotype (free text allowed)

The total sum of the genetic information of an organism that is known and relevant to the experiment being performed, including chromosomal, plasmid, viral or other genetic material which has been introduced into the organism either prior to or during the experiment.

http://www.ebi.ac.uk/efo/EFO_0000513

cultivar*

String

A cultivated plant variety selected and given a name because it has desirable characteristics that distinguish it from otherwise similar plants of the same species.

http://www.ebi.ac.uk/efo/EFO_0005136

material type*

Controlled Vocabulary - material type (free text allowed)

Used as an attribute column following Source Name, Sample Name, Extract Name, or Labeled Extract Name. This column contains terms describing the type of each material, for examples: whole organism, organism part, cell, total RNA.

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