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59 Assays visible to you, out of a total of 59

_A__S_03_stCuSTr-files

_p_stRT

Solanum tuberosum Cultivar-Specific Transcriptomes Solanum tuberosum Cultivar-Specific Transcriptomes

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_STRT-1

Study: _S_03_stCuSTr

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:05, Last updated: 13th Nov 2019 at 22:25

_A__S_02_denovo-files

_p_stRT

De novo assemblies De novo assemblies for cration of potato reference transcriptomes

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_STRT-1

Study: _S_02_denovo

Organisms: No organisms

SOPs: No SOPs

Data files: /reports/SupplementaryTableS2-Primary_potato_tr..., /reports/SupplementaryTableS2-Primary_potato_tr...

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:04, Last updated: 13th Nov 2019 at 22:25

_A__S_01_sequences-files

_p_stRT

NGS sequences for de novo assembly NGS sequences for de novo assembly; input for Study 02_denovo

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_STRT-1

Study: _S_01_sequences

Organisms: No organisms

SOPs: No SOPs

Data files: /reports/SupplementaryTableS1-Input_sequences_i..., /reports/SupplementaryTableS1-Input_sequences_i...

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:04, Last updated: 13th Nov 2019 at 22:25

_A_05_BUSCO-Stat

_p_stRT

Short Name: 05_BUSCO-Stat Assay Class: DRY Assay Type: Stat Title: BUSCO plots Description: BUSCO plots pISA Assay creation date: 2019-10-22 pISA Assay creator: Maja Zagorscak Analyst: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 13th Nov 2019 at 22:13

_A_05_BUSCO-Stat-old

_p_stRT

BUSCO plots BUSCO plots

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /input/path_to_files.txt, /intermediate/BUSCO_stPanTr_embryophyta_odb9.tsv, /intermediate/BUSCOall_embryophyta_odb9.tsv, /intermediate/evg_out.tsv, /reports/BUSCO_plots.html, /scripts/BUSCO_plots.Rmd

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:23, Last updated: 13th Nov 2019 at 22:06

_p_stRT

Multiple sequence alignment, pantranscriptomes' paralogue clusters Multiple sequence alignment, pantranscriptomes' paralogue clusters

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /input/D_P_R_g.tar.gz, /input/selected_4_wc.tar.gz, /output/5cv_weak-components.txt, /output/out_MAFFT_D_P_R_g_full_off_20_28/Merged..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_aa_ClustalOmega_selected_4_wc_150_o..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /output/out_cds_ClustalOmega_selected_4_wc_150_..., /reports/stPanTr_geneCount_paralogue-clusters.tiff, /scripts/01_merge_all_wc.Rmd, /scripts/02_run_5cv.fasta_MSA.sh, /scripts/MSA.py, /scripts/print.sh, /testSet/folderWithIds/IDs1, /testSet/folderWithIds/IDs2, /testSet/my.fasta

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:23

_A_03_BUSCO_1_3cvs-gffmerged

_p_stRT

BUSCO on pantranscriptome BUSCO on pantranscriptome

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /input/path_to_files.txt, /output/BUSCO_stPanTr_embryophyta_odb9.tsv, /output/short_summary.tar, /scripts/run_BUSCO_commands.sh

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:19, Last updated: 10th Nov 2019 at 23:19

(v.1.16.0-pre)

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