Programme: This Project is not associated with a Programme
SEEK ID: https://testing.sysmo-db.org/projects/217
Public web page: Not specified
Organisms: No Organisms specified
FAIRDOM PALs: No PALs for this Project
Project created: 21st Jun 2022
Related items
Input (Registered Sample List) *, Name of a protocol with samples as outputs (String) *, Name of protocol parameter 1 (String) *, Sample Name (String) *, Sample Characteristic 1 (String) *
Input (Registered Sample List) *, Name of a protocol with material output (String) *, Name of protocol parameter 1 (String) *, Output material Name (String) *, Output material characteristic 1 (String) *
Input (Registered Sample List) *, Name of a protocol with data file output (String) *, Name of protocol parameter 1 (String) *, Data file Name (String) *, Data file characteristic 1 (String) *
Source Name (String) *, Source Characteristic 1 (String) *
Input (Registered Sample List) *, nucleic acid sequencing (String) *, sequencing instrument (Controlled Vocabulary - sequencing instrument) *, quality scorer (String) , base caller (String) , Assay Name (String) *, Technology type (Controlled Vocabulary - Technology type) *, technical replicate (String) , run and lane (String) , B species or environment code (String) , experiment site code (String) , collection date code (String) , # samples/pool code (String) , individual code (String) , P protocol code (String) , technical replicate code (String) , U flowcell lanes (String) , unique sample code (String) , P U protocol lane (String) , Raw Data File (String) *, md5 value PE forward (String) , md5 value PE reverse (String) , md5 value SE (String) , submission date (String) , status (Controlled Vocabulary - status) , accession (String)
Input (Registered Sample List) *, library construction (String) *, library type (String) *, library source (Controlled Vocabulary - library source) *, library strategy (Controlled Vocabulary - library strategy) *, library selection (Controlled Vocabulary - library selection) *, library layout (Controlled Vocabulary - library layout) *, library strand (Controlled Vocabulary - library strand) , orientation (Controlled Vocabulary - orientation) , insert size (String) , primers remarks (String) , barcode i7 (String) , barcode i5 (String) , adaptor index i7 code (String) , adaptor index i5 code (String) , custom internal barcode i5 code (String) , custom internal barcode i5 sequence (String) , custom internal barcode i7 code (String) , custom internal barcode i7 sequence (String) , barcoded restriction site (String) , common restriction site (String) , plate id (String) , position in the plate (String) , library name (String) *
Input (Registered Sample List) *, nucleic acid extraction (String) *, Extract Name (String) *, Material type (Controlled Vocabulary - Material type) *
Source Name (String) *, organism (Controlled Vocabulary - organism) *, environmental samples (String) , remarks (String) , developmental stage (Controlled Vocabulary - developmental stage) *, age (Controlled Vocabulary - age) *, genotype (Controlled Vocabulary - genotype) *, cultivar (String) *, genetic modification (Controlled Vocabulary - genetic modification) , growth condition (Controlled Vocabulary - growth condition) , replicate (Controlled Vocabulary - replicate)
Input (Registered Sample List) *, sample collection (String) *, sampling site (String) , collection date (String) , organism part (Controlled Vocabulary - organism part) *, material type (Controlled Vocabulary - material type) *, Sample Name (String) *, # samples/pool (String) *, individual (String) *, remarks (String)
Source Name (String) *, organism (Controlled Vocabulary - organism) *, organism part (Controlled Vocabulary - organism part) *, developmental stage (Controlled Vocabulary - developmental stage) *, age (Controlled Vocabulary - age) *, genotype (Controlled Vocabulary - genotype) *, cultivar (String) *, cultured cell (Controlled Vocabulary - cultured cell) , cell type (Controlled Vocabulary - cell type) , clinical history (Controlled Vocabulary - clinical history) , chemical entity (Controlled Vocabulary - chemical entity) , diet (Controlled Vocabulary - diet) , disease (Controlled Vocabulary - disease) , disease staging (Controlled Vocabulary - disease staging) , dose (String) , ecotype (Controlled Vocabulary - ecotype) , enviromental history (String) , enviromental stress treatment (String) , fraction (String) , genetic modification (Controlled Vocabulary - genetic modification) , growth condition (Controlled Vocabulary - growth condition) , immunoprecipitate (Controlled Vocabulary - immunoprecipitate) , individual (String) , infection (String) , inferred cell type (String) , injury (Controlled Vocabulary - injury) , irradiate (String) , karyotype (String) , phenotype (Controlled Vocabulary - phenotype) , RNA interference (String) , replicate (Controlled Vocabulary - replicate) , sex (Controlled Vocabulary - sex) , single cell identifier (String) , specimen with known storage state (Controlled Vocabulary - specimen with known storage state) , strain (String) , time (String) , tumor grading (Controlled Vocabulary - tumor grading) , material type (Controlled Vocabulary - material type) *
Input (Registered Sample List) *, nucleic acid extraction (String) *, sample volume or weight for DNA extraction (String) , Extract Name (String) *, Material type (Controlled Vocabulary - Material type) *
Input (Registered Sample List) *, nucleic acid sequencing (String) *, sequencing instrument (Controlled Vocabulary - sequencing instrument) *, quality scorer (String) , base caller (String) , Assay Name (String) *, Technology type (Controlled Vocabulary - Technology type) *, Raw Data File (String) *
Input (Registered Sample List) *, sample collection (String) *, sampling site (String) , Sample Name (String) *, material type (Controlled Vocabulary - material type) *
Input (Registered Sample List) *, library construction (String) *, library source (Controlled Vocabulary - library source) *, library strategy (Controlled Vocabulary - library strategy) *, library selection (Controlled Vocabulary - library selection) *, library layout (Controlled Vocabulary - library layout) *, library strand (Controlled Vocabulary - library strand) , orientation (Controlled Vocabulary - orientation) , library name (String) *
Source Name (String) *, Title (String) *, Description (String) *, tax_id (String) *, organism (String) , ploidy (Controlled Vocabulary - ploidy) *, number of replicons (Integer) *, extrachromosomal elements (Integer) , estimated size (Integer) *, collected_by (String) , collection date (String) *, geographic location (altitude) (String) , geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) *, geographic location (latitude) (String) *, geographic location (longitude) (String) *, geographic location (region and locality) (String) , identified_by (String) , geographic location (depth) (String) , environment (biome) (Controlled Vocabulary - environment (biome)) , environment (feature) (String) , geographic location (elevation) (String) , source material identifiers (String) , isolation and growth condition (String) *, propagation (String) , plant structure (Controlled Vocabulary - plant structure) *, plant developmental stage (Controlled Vocabulary - plant developmental stage) *, sampled age (String) , sample phenotype (String) , sample health state (Controlled Vocabulary - sample health state) , sample disease status (String) , sample disease stage (String) , sample wet mass (String) , sample dry mass (String) , sample height (String) , sample length (String) , growth facility (Controlled Vocabulary - growth facility) , sample capture status (Controlled Vocabulary - sample capture status) , genotype (String) , genetic modification (String) , organism common name (String) , subspecific genetic lineage rank (String) , subspecific genetic lineage name (String) , biological status (String) , organism phenotype (String) , ancestral data (String) , source material description (String) , biotic relationship (String) , growth habit (Controlled Vocabulary - growth habit) , plant sex (String) , climate environment (String) , gaseous environment (String) , seasonal environment (String) , soil_taxonomic/FAO classification (String) , soil_taxonomic/local classification (String) , soil_taxonomic/local classification method (String) , soil type (Controlled Vocabulary - soil type) , soil type method (String) , drainage classification (Controlled Vocabulary - drainage classification) , texture (String) , texture method (String) , soil water content (String) , soil pH (String) , plant growth medium (String) *, rooting conditions (String) , culture rooting medium (String) , rooting medium macronutrients (String) , rooting medium micronutrients (String) , rooting medium organic supplements (String) , rooting medium carbon (String) , rooting medium regulators (String) , rooting medium solidifier (String) , rooting medium pH (String) , air temperature regimen (String) , antibiotic regimen (String) , chemical mutagen (String) , fertilizer regimen (String) , fungicide regimen (String) , gravity (String) , growth hormone regimen (String) , herbicide regimen (String) , humidity regimen (String) , mineral nutrient regimen (String) , non-mineral nutrient regimen (String) , pesticide regimen (String) , pH regimen (String) , radiation regimen (String) , rainfall regimen (String) , salt regimen (String) , standing water regimen (String) , watering regimen (String) , water temperature regimen (String) , plant treatment (String) , light regimen (String) , biotic regimen (String) , mechanical damage (String) , chemical administration (String) , perturbation (String) , submission date (String) , status (Controlled Vocabulary - status) , accession (String)
Input (Registered Sample List) *, sequence assembly (String) *, Normalization Name (String) , Data Transformation Name (String) , Derived Data File (String)
Source Name (String) *, Title (String) *, Description (String) *, tax_id (String) *, organism (String) , cell_type (String) , dev_stage (String) , germline (String) , tissue_lib (String) , tissue_type (String) , collection_date (String) , isolation_source (String) , lat_lon (String) , collected_by (String) , geographic location (country and/or sea) (Controlled Vocabulary - geographic location (country and/or sea)) , geographic location (region and locality) (String) , identified_by (String) , environmental_sample (Controlled Vocabulary - environmental_sample) , mating_type (String) , sex (String) , lab_host (String) , host scientific name (String) , bio_material (String) , culture_collection (String) , specimen_voucher (String) , cultivar (String) , ecotype (String) , isolate (String) , sub_species (String) , variety (String) , sub_strain (String) , cell_line (String) , serotype (String) , serovar (String) , strain (String) , submission date (String) , status (Controlled Vocabulary - status) , accession (String)
Input (Registered Sample List) *, sample collection (String) *, Sample Name (String) *
Input (Registered Sample List) *, sample collection (String) *, sample collection device or method (String) , sample material processing (Controlled Vocabulary - sample material processing) , amount or size of sample collected (String) , sample storage duration (String) , sample storage temperature (String) , sample storage location (String) , sampling time point (String) , Sample Name (String) *
Input (Registered Sample List) *, nucleic acid sequencing (String) *, sequencing instrument (Controlled Vocabulary - sequencing instrument) *, file type (Controlled Vocabulary - file type) *, file checksum (String) , Raw Data File (String) *, submission date (String) , status (Controlled Vocabulary - status) , accession (String)