Assays

What is an Assay?

488 Assays visible to you, out of a total of 506

_p_stRT

No description specified

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_STRT-1

Study: _S_03_stCuSTr

Organisms: No organisms

SOPs: No SOPs

Data files: /_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.4_STAR/sho..., /input/path_to_files.txt, /input/path_to_files.txt, /output/output_STAR_logs-n-SJ.tar.gz, /output/output_STAR_logs-n-SJ.tar.gz, /scripts/STAR_commands.txt, /scripts/STAR_commands.txt

Snapshots: No snapshots

Created: 7th Nov 2019 at 10:03, Last updated: 13th Nov 2019 at 22:29

_A_02.3_InterProScan

_p_stRT

InterProScan on tr2aacds output InterProScan on tr2aacds output

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_03_stCuSTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /input/path_to_files.txt, /input/path_to_files.txt, /intermediate/Desiree_IPS/all.okalt.aa.tsv, /intermediate/Desiree_IPS/all.okalt.aa.tsv, /intermediate/Desiree_IPS/all.okay.aa.tsv, /intermediate/Desiree_IPS/all.okay.aa.tsv, /intermediate/PW363_IPS/all.okalt.aa.tsv, /intermediate/PW363_IPS/all.okalt.aa.tsv, /intermediate/PW363_IPS/all.okay.aa.tsv, /intermediate/PW363_IPS/all.okay.aa.tsv, /intermediate/Rywal_IPS/all.okalt.aa.tsv, /intermediate/Rywal_IPS/all.okalt.aa.tsv, /intermediate/Rywal_IPS/all.okay.aa.tsv, /intermediate/Rywal_IPS/all.okay.aa.tsv, /output/Desiree_IPS_filtered_aggregated_filtere..., /output/Desiree_IPS_filtered_aggregated_filtere..., /output/PW363_IPS_filtered_aggregated_filtered.tsv, /output/PW363_IPS_filtered_aggregated_filtered.tsv, /output/Rywal_IPS_filtered_aggregated_filtered.tsv, /output/Rywal_IPS_filtered_aggregated_filtered.tsv, /reports/IPS_PowerQuery_PivotTable.xlsx, /reports/IPS_PowerQuery_PivotTable.xlsx, /scripts/01_potato_tr_evigene_IPS_commands.txt, /scripts/01_potato_tr_evigene_IPS_commands.txt, /scripts/02_reshape_merge_aggregate_filter.Rmd, /scripts/02_reshape_merge_aggregate_filter.Rmd

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:07, Last updated: 13th Nov 2019 at 22:29

_A_02.2_assembly-contribution-count

_p_stRT

assembly contribution count assembly contribution count, input/output tr2aacds

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_03_stCuSTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /input/path_to_files.txt, /input/path_to_files.txt, /intermediate_Desiree.tar.gz, /intermediate_Desiree.tar.gz, /intermediate_PW363.tar.gz, /intermediate_PW363.tar.gz, /intermediate_Rywal.tar.gz, /intermediate_Rywal.tar.gz, /output/Desiree_cnt_assemblies.txt, /output/Desiree_cnt_assemblies.txt, /output/PW363_cnt_assemblies.txt, /output/PW363_cnt_assemblies.txt, /output/Rywal_cnt_assemblies.txt, /output/Rywal_cnt_assemblies.txt, /scripts/countDesiree.sh, /scripts/countDesiree.sh, /scripts/countPW363.sh, /scripts/countPW363.sh, /scripts/countRywal.sh, /scripts/countRywal.sh

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:06, Last updated: 13th Nov 2019 at 22:28

_A__S_03_stCuSTr-files

_p_stRT

Solanum tuberosum Cultivar-Specific Transcriptomes Solanum tuberosum Cultivar-Specific Transcriptomes

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_STRT-1

Study: _S_03_stCuSTr

Organisms: No organisms

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:05, Last updated: 13th Nov 2019 at 22:25

_A__S_02_denovo-files

_p_stRT

De novo assemblies De novo assemblies for cration of potato reference transcriptomes

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_STRT-1

Study: _S_02_denovo

Organisms: No organisms

SOPs: No SOPs

Data files: /reports/SupplementaryTableS2-Primary_potato_tr..., /reports/SupplementaryTableS2-Primary_potato_tr...

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:04, Last updated: 13th Nov 2019 at 22:25

_A__S_01_sequences-files

_p_stRT

NGS sequences for de novo assembly NGS sequences for de novo assembly; input for Study 02_denovo

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_STRT-1

Study: _S_01_sequences

Organisms: No organisms

SOPs: No SOPs

Data files: /reports/SupplementaryTableS1-Input_sequences_i..., /reports/SupplementaryTableS1-Input_sequences_i...

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:04, Last updated: 13th Nov 2019 at 22:25

_A_05_BUSCO-Stat

_p_stRT

Short Name: 05_BUSCO-Stat Assay Class: DRY Assay Type: Stat Title: BUSCO plots Description: BUSCO plots pISA Assay creation date: 2019-10-22 pISA Assay creator: Maja Zagorscak Analyst: Maja Zagorscak Phenodata: None Featuredata: Data:

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_04_stPanTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 13th Nov 2019 at 22:13

(v.1.16.0-pre)

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