A summary of the differences in the SBML between version 1 and version 2 for the files SABIOmdl13Oct20201132.xml and SABIOmdl13Oct20201134.xml respectively

Deletions are coloured in red and insertions are coloured in blue

SBML Differences

Both documents have same Level/Version: L3V1

Units

mM (mM) → M (M)	Defined by: ([litre]^-1) · (10^-3·[mole]) Attribute name has changed: mM → M Attribute id has changed: mM → M
swedgeone (s^(-1))	deleted
Mdivmin (M/min)	inserted

Compartments

compart_Cell (Cell)	deleted
compart_intracellular (intracellular)	inserted

Species

SPC_28_Cell (Glycerone phosphate) → SPC_28_intracellular (Glycerone phosphate)	Attribute metaid has changed: META_SPC_28_Cell → META_SPC_28_intracellular Attribute compartment has changed: compart_Cell → compart_intracellular Attribute id has changed: SPC_28_Cell → SPC_28_intracellular There are modifications (annotations/notes/..), which are not displayed in this report
ENZ_212620_Cell (triose-phosphate isomerase(Enzyme) wildtype Triosephosphate isomerase) → ENZ_312088_intracellular (fructose-bisphosphate aldolase(Enzyme) wildtype)	Attribute metaid has changed: META_ENZ_212620_Cell → META_ENZ_312088_intracellular Attribute compartment has changed: compart_Cell → compart_intracellular Attribute name has changed: triose-phosphate isomerase(Enzyme) wildtype Triosephosphate isomerase → fructose-bisphosphate aldolase(Enzyme) wildtype Attribute id has changed: ENZ_212620_Cell → ENZ_312088_intracellular There are modifications (annotations/notes/..), which are not displayed in this report
SPC_27_Cell (D-Glyceraldehyde 3-phosphate) → SPC_27_intracellular (D-Glyceraldehyde 3-phosphate)	Attribute metaid has changed: META_SPC_27_Cell → META_SPC_27_intracellular Attribute compartment has changed: compart_Cell → compart_intracellular Attribute id has changed: SPC_27_Cell → SPC_27_intracellular There are modifications (annotations/notes/..), which are not displayed in this report
SPC_1465_intracellular (D-Fructose 1,6-bisphosphate)	inserted

Reactions

REAC_0

SPC_28_Cell + SPC_1465_intracellular → SPC_27_Cell + SPC_27_intracellular + SPC_28_intracellular
Modifiers: ENZ_212620_Cell(stimulator) + ENZ_312088_intracellular(stimulator);
Kinetic Law
- local parameter: kcat (kcat)=564.37909698 s^(-1) [const]
- local parameter: Ks_SPC_28_Cell (Ks_Glycerone_phosphate)=6.4539903078 mM [const]
- local parameter: KgapPFvALD_SPC_27_intracellular (KgapPFvALD_DGlyceraldehyde_3phosphate)=4.6E-5 M [const]
- local parameter: VPFvALD (VPFvALD)=0.0569593147718 M/min [const]
- local parameter: Kf16bpPFvALD_SPC_1465_intracellular (Kf16bpPFvALD_DFructose_16bisphosphate)=6.84E-5 M [const]
- local parameter: KeqPFvALD (KeqPFvALD)=9.0E-5 M [const]
- local parameter: KdhapPFvALD_SPC_28_intracellular (KdhapPFvALD_Glycerone_phosphate)=1.1E-4 M [const]
- local parameter: Vpf (Vpf)=null [no units] [const]
- modified math:
  $KL_37635 (kcat, SPC_28_Cell, ENZ_212620_Cell, Ks_SPC_28_Cell)$
  to
  $KL_54901 (VPFvALD, Vpf, KgapPFvALD_SPC_27_intracellular, Kf16bpPFvALD_SPC_1465_intracellular, SPC_1465_intracellular, KdhapPFvALD_SPC_28_intracellular, SPC_28_intracellular, KeqPFvALD, SPC_27_intracellular)$

There are modifications (annotations/notes/..), which are not displayed in this report

Functions

KL_37635 → KL_54901

Attribute sboTerm was deleted: SBO:0000029
Attribute id has changed: KL_37635 → KL_54901
modified math:
$λ (kcat, S, Et, Ks, \frac{kcat Et S}{Ks + S})$
to
$λ (VPFvALD, Vpf, KgapPFvALD, Kf16bpPFvALD, f16bpPF, KdhapPFvALD, dhapPF, KeqPFvALD, gapPF, \frac{\frac{Vpf VPFvALD f16bpPF}{Kf16bpPFvALD Vpf} (1 - \frac{\frac{dhapPF gapPF}{f16bpPF}}{Vpf KeqPFvALD})}{1 + \frac{dhapPF}{KdhapPFvALD Vpf} + \frac{gapPF}{KgapPFvALD Vpf} + \frac{f16bpPF}{Kf16bpPFvALD Vpf} + \frac{dhapPF gapPF}{KgapPFvALD KdhapPFvALD Vpf Vpf}})$

Chemical Reaction Network

Deletions are coloured in red and insertions are coloured in blue, and updates that don't affect the network are yellow.

species species reaction reaction-participant participant in reaction mod-stimulator stimulator mod-inhibitor inhibitor mod-unknown unknown modifier