Assays

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24 Assays visible to you, out of a total of 24

_A_02.8_DIAMOND

_p_stRT

No description specified

Submitter: Andrej Blejec

Assay type: Experimental Assay Type

Technology type: Technology Type

Investigation: _I_STRT-1

Study: _S_03_stCuSTr

Organisms: No organisms

SOPs: No SOPs

Data files: /NA.TXT, /_p_stRT/_I_STRT/_S_03_stCuSTr/_A_02.8_DIAMOND/..., /input/path_to_files.txt, /output/Desiree.cds_SP_TrEMBL_plants.out.ENCHfo..., /output/Desiree.cds_Solanaceae.out.ENCHformat_t..., /output/Desiree.cds_SwissProt_TrEMBL.out.ENCHfo..., /output/Desiree.cds_SwissProt_TrEMBL.out.ENCHfo..., /output/Desiree.cds_solanumTuberosum.out.ENCHfo..., /output/Desiree.tr_SP_TrEMBL_plants.out.ENCHfor..., /output/Desiree.tr_Solanaceae.out.ENCHformat_to..., /output/Desiree.tr_SwissProt_TrEMBL.out.ENCHfor..., /output/Desiree.tr_solanumTuberosum.out.ENCHfor..., /output/Desiree_rescued.tr_SP_TrEMBL_plants.out..., /output/Desiree_rescued.tr_Solanaceae.out.ENCHf..., /output/Desiree_rescued.tr_solanumTuberosum.out..., /output/Desiree_rescued.tr_sprot_trembl.out.ENC..., /output/PW363.cds_SP_TrEMBL_plants.out.ENCHform..., /output/PW363.cds_Solanaceae.out.ENCHformat_top..., /output/PW363.cds_SwissProt_TrEMBL.out.ENCHform..., /output/PW363.cds_solanumTuberosum.out.ENCHform..., /output/PW363.tr_SP_TrEMBL_plants.out.ENCHforma..., /output/PW363.tr_Solanaceae.out.ENCHformat_top1..., /output/PW363.tr_SwissProt_TrEMBL.out.ENCHforma..., /output/PW363.tr_solanumTuberosum.out.ENCHforma..., /output/PW363_rescued.tr_SP_TrEMBL_plants.out.E..., /output/PW363_rescued.tr_Solanaceae.out.ENCHfor..., /output/PW363_rescued.tr_solanumTuberosum.out.E..., /output/PW363_rescued.tr_sprot_trembl.out.ENCHf..., /output/Rywal.cds_Solanaceae.out.ENCHformat_top..., /output/Rywal.cds_Swissprot_TrEMBL_plants.out.E..., /output/Rywal.cds_solanumTuberosum.out.ENCHform..., /output/Rywal.cds_sprot_trembl.out.ENCHformat_t..., /output/Rywal.tr_Solanaceae.out.ENCHformat_top1..., /output/Rywal.tr_Swissprot_TrEMBL_plants.out.EN..., /output/Rywal.tr_solanumTuberosum.out.ENCHforma..., /output/Rywal.tr_sprot_trembl.out.ENCHformat_to..., /output/Rywal_rescued.tr_SP_TrEMBL_plants.out.E..., /output/Rywal_rescued.tr_Solanaceae.out.ENCHfor..., /output/Rywal_rescued.tr_solanumTuberosum.out.E..., /output/Rywal_rescued.tr_sprot_trembl.out.ENCHf..., /scripts/01_get_input.sh, /scripts/02_DIAMOND_commands.sh, /scripts/03_archive_files.sh

Snapshots: No snapshots

Created: 7th Nov 2019 at 09:18, Last updated: 10th Nov 2019 at 23:12

_A_02.7_VecScreen

_p_stRT

VecScreen on raw tr2aacds output VecScreen and blastn on raw tr2aacds output

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_03_stCuSTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: /input/path_to_files.txt, /intermediate.tar.gz, /output/Desiree_vecscreen.tsv, /output/PW363_vecscreen.tsv, /output/Rywal_vecscreen.tsv, /scripts/01_get_input.sh, /scripts/02_VecScreenPlus_blastn.sh, /scripts/ENCH_sumablastplus.pl

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:09, Last updated: 10th Nov 2019 at 23:09

_A_02.2_assembly-contribution-count

_p_stRT

assembly contribution count assembly contribution count, input/output tr2aacds

Submitter: Andrej Blejec

Biological problem addressed: Model Analysis Type

Investigation: _I_STRT-1

Study: _S_03_stCuSTr

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots

Created: 10th Nov 2019 at 23:06, Last updated: 10th Nov 2019 at 23:06

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