<?xml version='1.0' encoding='UTF-8' standalone='no'?> <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1"> <model name="SABIOmdl13Oct20201132"> <notes><body xmlns="http://www.w3.org/1999/xhtml"> <p> This model has been created with the help of the SABIO-RK Database (http://sabio.h-its.org/) (c) 2005-2020 HITS gGmbH http://www.h-its.org </p><br/> To cite SABIO-RK Database, please use "http://www.ncbi.nlm.nih.gov/pubmed/22102587" <br/> SABIO-RK - database for biochemical reaction kinetics. Wittig U, Kania R, Golebiewski M, Rey M, Shi L, Jong L, Algaa E, Weidemann A, Sauer-Danzwith H, Mir S, Krebs O, Bittkowski M, Wetsch E, Rojas I, Mueller W. Nucleic Acids Res. 2012;40(Database issue)790-6 </body></notes> <listOfFunctionDefinitions> <functionDefinition id="KL_37635" sboTerm="SBO:0000029"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <lambda> <bvar> <ci> kcat </ci> </bvar> <bvar> <ci> S </ci> </bvar> <bvar> <ci> Et </ci> </bvar> <bvar> <ci> Ks </ci> </bvar> <apply> <divide/> <apply> <times/> <apply> <times/> <ci> kcat </ci> <ci> Et </ci> </apply> <ci> S </ci> </apply> <apply> <plus/> <ci> Ks </ci> <ci> S </ci> </apply> </apply> </lambda> </math> </functionDefinition> </listOfFunctionDefinitions> <listOfUnitDefinitions> <unitDefinition id="swedgeone" name="s^(-1)"> <listOfUnits> <unit scale="0" exponent="-1" multiplier="1" kind="second"/> </listOfUnits> </unitDefinition> <unitDefinition id="mM" name="mM"> <listOfUnits> <unit scale="0" exponent="-1" multiplier="1" kind="litre"/> <unit scale="-3" exponent="1" multiplier="1" kind="mole"/> </listOfUnits> </unitDefinition> </listOfUnitDefinitions> <listOfCompartments> <compartment id="compart_Cell" constant="true" name="Cell"/> </listOfCompartments> <listOfSpecies> <species id="SPC_28_Cell" initialConcentration="1" constant="false" hasOnlySubstanceUnits="false" name="Glycerone phosphate" metaid="META_SPC_28_Cell" boundaryCondition="false" compartment="compart_Cell"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> <rdf:Description rdf:about="#META_SPC_28_Cell"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16108"/> <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00111"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> </species> <species id="SPC_27_Cell" initialConcentration="1" constant="false" hasOnlySubstanceUnits="false" name="D-Glyceraldehyde 3-phosphate" metaid="META_SPC_27_Cell" boundaryCondition="false" compartment="compart_Cell"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> <rdf:Description rdf:about="#META_SPC_27_Cell"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:29052"/> <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00118"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> </species> <species id="ENZ_212620_Cell" initialConcentration="1" constant="false" hasOnlySubstanceUnits="false" name="triose-phosphate isomerase(Enzyme) wildtype Triosephosphate isomerase" metaid="META_ENZ_212620_Cell" boundaryCondition="false" compartment="compart_Cell"> <annotation> <sbrk:sabiork xmlns:sbrk="http://sabiork.h-its.org"> <sbrk:modifierType>Modifier-Catalyst</sbrk:modifierType> </sbrk:sabiork> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> <rdf:Description rdf:about="#META_ENZ_212620_Cell"> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="https://identifiers.org/uniprot/P00942"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> </species> </listOfSpecies> <listOfReactions> <reaction id="REAC_0" metaid="META_REAC_0" reversible="true" fast="false"> <annotation> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> <rdf:Description rdf:about="#META_REAC_0"> <bqbiol:isVersionOf> <rdf:Bag> <rdf:li rdf:resource="https://identifiers.org/ec-code/5.3.1.1"/> </rdf:Bag> </bqbiol:isVersionOf> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="https://identifiers.org/kegg.reaction/R01015"/> </rdf:Bag> </bqbiol:is> <bqbiol:hasTaxon> <rdf:Bag> <rdf:li rdf:resource="https://identifiers.org/taxonomy/4932"/> </rdf:Bag> </bqbiol:hasTaxon> <bqbiol:is> <rdf:Bag> <rdf:li rdf:resource="https://identifiers.org/sabiork.reaction/4"/> </rdf:Bag> </bqbiol:is> </rdf:Description> </rdf:RDF> </annotation> <listOfReactants> <speciesReference constant="true" species="SPC_28_Cell" sboTerm="SBO:0000015" stoichiometry="1"/> </listOfReactants> <listOfProducts> <speciesReference constant="true" species="SPC_27_Cell" sboTerm="SBO:0000011" stoichiometry="1"/> </listOfProducts> <listOfModifiers> <modifierSpeciesReference species="ENZ_212620_Cell" sboTerm="SBO:0000460"/> </listOfModifiers> <kineticLaw metaid="META_KL_37635" sboTerm="SBO:0000029"> <annotation> <sbrk:sabiork xmlns:sbrk="http://sabiork.h-its.org"> <sbrk:kineticLawID>37635</sbrk:kineticLawID> <sbrk:experimentalConditions> <sbrk:pH> <sbrk:startValuepH>6.5</sbrk:startValuepH> </sbrk:pH> <sbrk:temperature> <sbrk:startValueTemperature>30.0</sbrk:startValueTemperature> <sbrk:temperatureUnit>°C</sbrk:temperatureUnit> </sbrk:temperature> <sbrk:buffer>4.0mM arsenate(2-), 100.0mM 2-(N-morpholino)ethanesulfonic acid, 5.0mM magnesium dichloride, 100.0mM potassium chloride, 1.0mM ethylenediaminetetraacetate, 1.0mM NAD, 0.12mM 1,4-dithiothreitol</sbrk:buffer> </sbrk:experimentalConditions> </sbrk:sabiork> <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> <rdf:Description rdf:about="#META_KL_37635"> <bqbiol:isDescribedBy> <rdf:Bag> <rdf:li rdf:resource="https://identifiers.org/dbkgroup.org:8080/mcisb-web/MeMo-RK/index.jsp?application=MeMo-RK&directory=Home&experimentId=_23097585_6289_42e8_803f_89a920fd77f5"/> </rdf:Bag> </bqbiol:isDescribedBy> <bqbiol:isDescribedBy> <rdf:Bag> <rdf:li rdf:resource="https://identifiers.org/sabiork.kineticrecord/37635"/> </rdf:Bag> </bqbiol:isDescribedBy> </rdf:Description> </rdf:RDF> </annotation> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <ci> KL_37635 </ci> <ci> kcat </ci> <ci> SPC_28_Cell </ci> <ci> ENZ_212620_Cell </ci> <ci> Ks_SPC_28_Cell </ci> </apply> </math> <listOfLocalParameters> <localParameter id="kcat" name="kcat" value="564.37909698" sboTerm="SBO:0000025" units="swedgeone"/> <localParameter id="Ks_SPC_28_Cell" name="Ks_Glycerone_phosphate" value="6.4539903078" sboTerm="SBO:0000027" units="mM"/> </listOfLocalParameters> </kineticLaw> </reaction> </listOfReactions> </model> </sbml>