<?xml version="1.0" encoding="UTF-8"?> <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" level="3" version="1"> <model id="martins2" name="martins2" substanceUnits="mole" timeUnits="second" extentUnits="mole"> <listOfUnitDefinitions> <unitDefinition metaid="metaid_0" id="per_hour" name="per_hour"> <listOfUnits> <unit kind="second" exponent="1" scale="0" multiplier="3600"/> </listOfUnits> </unitDefinition> </listOfUnitDefinitions> <listOfCompartments> <compartment metaid="metaid_1" id="compartment" spatialDimensions="3" size="1" units="litre" constant="true"/> </listOfCompartments> <listOfSpecies> <species metaid="metaid_2" id="PsbA1" name="PsbA1" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false"/> <species metaid="metaid_3" id="PsbA1mut" name="PsbA1mut" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false"/> <species metaid="metaid_4" id="SigC" name="SigC" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false"/> <species metaid="metaid_5" id="SigC_a" name="SigC_a" compartment="compartment" initialAmount="0" hasOnlySubstanceUnits="true" boundaryCondition="false" constant="false"/> <species metaid="metaid_6" id="SigCtot" name="SigCtot" compartment="compartment" initialConcentration="0" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"/> </listOfSpecies> <listOfParameters> <parameter metaid="metaid_7" id="A" name="A" value="1" constant="true"/> <parameter metaid="metaid_8" id="K_theta_p" value="0.1" constant="false"/> <parameter metaid="metaid_9" id="K_theta_s" value="0.9" constant="false"/> <parameter metaid="metaid_10" id="Ksp" value="2.5" constant="false"/> <parameter metaid="metaid_11" id="Kss" value="1.4" constant="false"/> <parameter metaid="metaid_12" id="Tc" name="Tc" value="24" constant="true"/> <parameter metaid="metaid_13" id="Td" name="Td" value="19.5" constant="true"/> <parameter metaid="metaid_14" id="Ts" name="Ts" value="6" constant="true"/> <parameter metaid="metaid_15" id="Ty" name="Ty" value="5.6" constant="true"/> <parameter metaid="metaid_16" id="Vp" value="0.2" constant="false"/> <parameter metaid="metaid_17" id="Vs" value="3.7" constant="false"/> <parameter metaid="metaid_18" id="bas" name="bas" value="0" constant="true"/> <parameter metaid="metaid_19" id="delcc" name="delcc" value="1" constant="true"/> <parameter metaid="metaid_20" id="delcp" name="delcp" value="1" constant="true"/> <parameter metaid="metaid_21" id="h_theta_p" value="2" constant="false"/> <parameter metaid="metaid_22" id="h_theta_s" value="5" constant="false"/> <parameter metaid="metaid_23" id="hsp" value="5" constant="false"/> <parameter metaid="metaid_24" id="hss" value="2" constant="false"/> <parameter metaid="metaid_25" id="kb" name="kb" value="0.1" constant="true"/> <parameter metaid="metaid_26" id="kf" name="kf" value="10" constant="true"/> <parameter metaid="metaid_27" id="m" name="m" value="1" constant="true"/> <parameter metaid="metaid_28" id="theta" name="theta" value="0" constant="false"/> </listOfParameters> <listOfRules> <assignmentRule metaid="metaid_29" variable="SigCtot"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <plus/> <ci> SigC </ci> <ci> SigC_a </ci> </apply> </math> </assignmentRule> <assignmentRule metaid="metaid_30" variable="theta"> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <plus/> <ci> bas </ci> <apply> <times/> <apply> <minus/> <ci> A </ci> <ci> bas </ci> </apply> <apply> <power/> <apply> <times/> <apply> <divide/> <cn> 1 </cn> <cn> 2 </cn> </apply> <apply> <plus/> <cn> 1 </cn> <apply> <cos/> <apply> <divide/> <apply> <times/> <cn> 2 </cn> <pi/> <csymbol encoding="text" definitionURL="http://www.sbml.org/sbml/symbols/time"> time </csymbol> </apply> <ci> Tc </ci> </apply> </apply> </apply> </apply> <ci> m </ci> </apply> </apply> </apply> </math> </assignmentRule> </listOfRules> <listOfReactions> <reaction metaid="metaid_33" id="v1" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_31" species="SigC" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference metaid="metaid_32" species="SigC_a" stoichiometry="1" constant="true"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> kf </ci> <ci> SigC </ci> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_36" id="v2" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_34" species="SigC_a" stoichiometry="1" constant="true"/> </listOfReactants> <listOfProducts> <speciesReference metaid="metaid_35" species="SigC" stoichiometry="1" constant="true"/> </listOfProducts> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <ci> kb </ci> <ci> SigC_a </ci> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_38" id="v3" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_37" species="SigC_a" stoichiometry="1" constant="true"/> </listOfReactants> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <apply> <plus/> <apply> <divide/> <cn type="integer"> 1 </cn> <ci> Td </ci> </apply> <apply> <divide/> <cn type="integer"> 1 </cn> <ci> Ts </ci> </apply> </apply> <apply> <ln/> <cn type="integer"> 2 </cn> </apply> <ci> SigC_a </ci> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_40" id="v4" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_39" species="SigC" stoichiometry="1" constant="true"/> </listOfReactants> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <apply> <plus/> <apply> <divide/> <cn type="integer"> 1 </cn> <ci> Td </ci> </apply> <apply> <divide/> <cn type="integer"> 1 </cn> <ci> Ts </ci> </apply> </apply> <apply> <ln/> <cn type="integer"> 2 </cn> </apply> <ci> SigC </ci> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_43" id="v5" name="v5" reversible="true" fast="false"> <listOfProducts> <speciesReference metaid="metaid_41" species="SigC" stoichiometry="1" constant="true"/> </listOfProducts> <listOfModifiers> <modifierSpeciesReference metaid="metaid_42" species="SigC_a"/> </listOfModifiers> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vs </ci> <apply> <power/> <apply> <divide/> <ci> theta </ci> <ci> K_theta_s </ci> </apply> <ci> h_theta_s </ci> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <power/> <apply> <divide/> <ci> theta </ci> <ci> K_theta_s </ci> </apply> <ci> h_theta_s </ci> </apply> <apply> <times/> <ci> delcc </ci> <apply> <power/> <apply> <divide/> <ci> SigC_a </ci> <ci> Kss </ci> </apply> <ci> hss </ci> </apply> </apply> <apply> <times/> <ci> delcc </ci> <apply> <power/> <apply> <divide/> <ci> theta </ci> <ci> K_theta_s </ci> </apply> <ci> h_theta_s </ci> </apply> <apply> <power/> <apply> <divide/> <ci> SigC_a </ci> <ci> Kss </ci> </apply> <ci> hss </ci> </apply> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_45" id="v6" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_44" species="PsbA1" stoichiometry="1" constant="true"/> </listOfReactants> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <apply> <plus/> <apply> <divide/> <cn type="integer"> 1 </cn> <ci> Td </ci> </apply> <apply> <divide/> <cn type="integer"> 1 </cn> <ci> Ty </ci> </apply> </apply> <apply> <ln/> <cn type="integer"> 2 </cn> </apply> <ci> PsbA1 </ci> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_48" id="v7" name="v7" reversible="true" fast="false"> <listOfProducts> <speciesReference metaid="metaid_46" species="PsbA1" stoichiometry="1" constant="true"/> </listOfProducts> <listOfModifiers> <modifierSpeciesReference metaid="metaid_47" species="SigC_a"/> </listOfModifiers> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vp </ci> <apply> <power/> <apply> <divide/> <ci> theta </ci> <ci> K_theta_p </ci> </apply> <ci> h_theta_p </ci> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <power/> <apply> <divide/> <ci> theta </ci> <ci> K_theta_p </ci> </apply> <ci> h_theta_p </ci> </apply> <apply> <times/> <ci> delcp </ci> <apply> <power/> <apply> <divide/> <ci> SigC_a </ci> <ci> Ksp </ci> </apply> <ci> hsp </ci> </apply> </apply> <apply> <times/> <ci> delcp </ci> <apply> <power/> <apply> <divide/> <ci> theta </ci> <ci> K_theta_p </ci> </apply> <ci> h_theta_p </ci> </apply> <apply> <power/> <apply> <divide/> <ci> SigC_a </ci> <ci> Ksp </ci> </apply> <ci> hsp </ci> </apply> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_51" id="v8" name="v8" reversible="true" fast="false"> <listOfProducts> <speciesReference metaid="metaid_49" species="PsbA1mut" stoichiometry="1" constant="true"/> </listOfProducts> <listOfModifiers> <modifierSpeciesReference metaid="metaid_50" species="SigC_a"/> </listOfModifiers> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <divide/> <apply> <times/> <ci> Vp </ci> <apply> <power/> <apply> <divide/> <ci> theta </ci> <ci> K_theta_p </ci> </apply> <ci> h_theta_p </ci> </apply> </apply> <apply> <plus/> <cn type="integer"> 1 </cn> <apply> <power/> <apply> <divide/> <ci> theta </ci> <ci> K_theta_p </ci> </apply> <ci> h_theta_p </ci> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <apply> <power/> <apply> <divide/> <ci> SigC_a </ci> <ci> Ksp </ci> </apply> <ci> hsp </ci> </apply> </apply> <apply> <times/> <cn type="integer"> 0 </cn> <apply> <power/> <apply> <divide/> <ci> theta </ci> <ci> K_theta_p </ci> </apply> <ci> h_theta_p </ci> </apply> <apply> <power/> <apply> <divide/> <ci> SigC_a </ci> <ci> Ksp </ci> </apply> <ci> hsp </ci> </apply> </apply> </apply> </apply> </math> </kineticLaw> </reaction> <reaction metaid="metaid_53" id="v9" reversible="true" fast="false"> <listOfReactants> <speciesReference metaid="metaid_52" species="PsbA1mut" stoichiometry="1" constant="true"/> </listOfReactants> <kineticLaw> <math xmlns="http://www.w3.org/1998/Math/MathML"> <apply> <times/> <apply> <plus/> <apply> <divide/> <cn type="integer"> 1 </cn> <ci> Td </ci> </apply> <apply> <divide/> <cn type="integer"> 1 </cn> <ci> Ty </ci> </apply> </apply> <apply> <ln/> <cn type="integer"> 2 </cn> </apply> <ci> PsbA1mut </ci> </apply> </math> </kineticLaw> </reaction> </listOfReactions> </model> </sbml>