files at

../../_A_01_evigene/intermediate_tr2aacds_Desiree/okayset/*.cds
../../_A_01_evigene/intermediate_tr2aacds_Desiree/okayset/*.tr

../../_A_01_evigene/intermediate_tr2aacds_PW363/04tr2aa/okayset/*.cds
../../_A_01_evigene/intermediate_tr2aacds_PW363/04tr2aa/okayset/*.tr

../../_A_01_evigene/intermediate_tr2aacds_Rywal/okayset/*.cds
../../_A_01_evigene/intermediate_tr2aacds_Rywal/okayset/*.tr

see get_input.sh script

also files copied from VecScreen step
see lines
	cp $whereTo/Rywal.linear.utrorf_tr  ../../_A_02.8_DIAMOND/input/Rywal.linear.utrorf_tr
	cp $whereTo/PW363.linear.utrorf_tr ../../_A_02.8_DIAMOND/input/PW363.linear.utrorf_tr
	cp $whereTo/Desiree.linear.utrorf_tr ../../_A_02.8_DIAMOND/input/Desiree.linear.utrorf_tr
in 02_VecScreenPlus_blastn.sh