[ INFO] 2019-10-08 20:06:59 : Loading assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/input/Rywal.cds [ INFO] 2019-10-08 20:07:06 : Analysing assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/input/Rywal.cds [ INFO] 2019-10-08 20:07:06 : Results will be saved in /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/output/Rywal_initial_transrate_usingReference/Rywal [ INFO] 2019-10-08 20:07:06 : Calculating contig metrics... [ INFO] 2019-10-08 20:07:15 : Contig metrics: [ INFO] 2019-10-08 20:07:15 : ----------------------------------- [ INFO] 2019-10-08 20:07:15 : n seqs 134755 [ INFO] 2019-10-08 20:07:15 : smallest 93 [ INFO] 2019-10-08 20:07:15 : largest 10551 [ INFO] 2019-10-08 20:07:15 : n bases 68870376 [ INFO] 2019-10-08 20:07:15 : mean len 458.61 [ INFO] 2019-10-08 20:07:15 : n under 200 52653 [ INFO] 2019-10-08 20:07:15 : n over 1k 19175 [ INFO] 2019-10-08 20:07:15 : n over 10k 1 [ INFO] 2019-10-08 20:07:15 : n with orf 43870 [ INFO] 2019-10-08 20:07:15 : mean orf percent 99.74 [ INFO] 2019-10-08 20:07:15 : n90 351 [ INFO] 2019-10-08 20:07:15 : n70 693 [ INFO] 2019-10-08 20:07:15 : n50 1227 [ INFO] 2019-10-08 20:07:15 : n30 1944 [ INFO] 2019-10-08 20:07:15 : n10 10551 [ INFO] 2019-10-08 20:07:15 : gc 0.42 [ INFO] 2019-10-08 20:07:15 : gc skew 0.07 [ INFO] 2019-10-08 20:07:15 : at skew 0.01 [ INFO] 2019-10-08 20:07:15 : cpg ratio 1.48 [ INFO] 2019-10-08 20:07:15 : bases n 40673 [ INFO] 2019-10-08 20:07:15 : proportion n 0.0 [ INFO] 2019-10-08 20:07:15 : linguistic complexity 0.1 [ INFO] 2019-10-08 20:07:15 : Contig metrics done in 10 seconds [ INFO] 2019-10-08 20:07:15 : No reads provided, skipping read diagnostics [ INFO] 2019-10-08 20:07:15 : Calculating comparative metrics... [ INFO] 2019-10-08 20:08:10 : Comparative metrics: [ INFO] 2019-10-08 20:08:10 : ----------------------------------- [ INFO] 2019-10-08 20:08:10 : CRBB hits 66258 [ INFO] 2019-10-08 20:08:10 : n contigs with CRBB 66258 [ INFO] 2019-10-08 20:08:10 : p contigs with CRBB 0.49 [ INFO] 2019-10-08 20:08:10 : rbh per reference 1.34 [ INFO] 2019-10-08 20:08:10 : n refs with CRBB 23549 [ INFO] 2019-10-08 20:08:10 : p refs with CRBB 0.48 [ INFO] 2019-10-08 20:08:10 : cov25 21842 [ INFO] 2019-10-08 20:08:10 : p cov25 0.44 [ INFO] 2019-10-08 20:08:10 : cov50 20258 [ INFO] 2019-10-08 20:08:10 : p cov50 0.41 [ INFO] 2019-10-08 20:08:10 : cov75 18036 [ INFO] 2019-10-08 20:08:10 : p cov75 0.37 [ INFO] 2019-10-08 20:08:10 : cov85 16906 [ INFO] 2019-10-08 20:08:10 : p cov85 0.34 [ INFO] 2019-10-08 20:08:10 : cov95 14967 [ INFO] 2019-10-08 20:08:10 : p cov95 0.3 [ INFO] 2019-10-08 20:08:10 : reference coverage 0.53 [ INFO] 2019-10-08 20:08:10 : Comparative metrics done in 55 seconds [ INFO] 2019-10-08 20:08:10 : ----------------------------------- [ INFO] 2019-10-08 20:08:10 : Writing contig metrics for each contig to /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/output/Rywal_initial_transrate_usingReference/Rywal/contigs.csv [ INFO] 2019-10-08 20:08:19 : Writing analysis results to assemblies.csv