[ INFO] 2019-10-08 20:04:04 : Loading assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/input/PW363.cds
[ INFO] 2019-10-08 20:04:20 : Analysing assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/input/PW363.cds
[ INFO] 2019-10-08 20:04:20 : Results will be saved in /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/output/PW363_initial_transrate_usingReference/PW363
[ INFO] 2019-10-08 20:04:20 : Calculating contig metrics...
[ INFO] 2019-10-08 20:04:42 : Contig metrics:
[ INFO] 2019-10-08 20:04:42 : -----------------------------------
[ INFO] 2019-10-08 20:04:42 : n seqs                       273216
[ INFO] 2019-10-08 20:04:42 : smallest                         93
[ INFO] 2019-10-08 20:04:42 : largest                       10956
[ INFO] 2019-10-08 20:04:42 : n bases                   152921568
[ INFO] 2019-10-08 20:04:42 : mean len                     515.91
[ INFO] 2019-10-08 20:04:42 : n under 200                   88230
[ INFO] 2019-10-08 20:04:42 : n over 1k                     44508
[ INFO] 2019-10-08 20:04:42 : n over 10k                        3
[ INFO] 2019-10-08 20:04:42 : n with orf                   109649
[ INFO] 2019-10-08 20:04:42 : mean orf percent              99.74
[ INFO] 2019-10-08 20:04:42 : n90                             366
[ INFO] 2019-10-08 20:04:42 : n70                             702
[ INFO] 2019-10-08 20:04:42 : n50                            1110
[ INFO] 2019-10-08 20:04:42 : n30                            1659
[ INFO] 2019-10-08 20:04:42 : n10                            4047
[ INFO] 2019-10-08 20:04:42 : gc                             0.42
[ INFO] 2019-10-08 20:04:42 : gc skew                        0.08
[ INFO] 2019-10-08 20:04:42 : at skew                        0.02
[ INFO] 2019-10-08 20:04:42 : cpg ratio                      1.47
[ INFO] 2019-10-08 20:04:42 : bases n                       77040
[ INFO] 2019-10-08 20:04:42 : proportion n                    0.0
[ INFO] 2019-10-08 20:04:42 : linguistic complexity          0.11
[ INFO] 2019-10-08 20:04:42 : Contig metrics done in 23 seconds
[ INFO] 2019-10-08 20:04:42 : No reads provided, skipping read diagnostics
[ INFO] 2019-10-08 20:04:42 : Calculating comparative metrics...
[ INFO] 2019-10-08 20:06:36 : Comparative metrics:
[ INFO] 2019-10-08 20:06:36 : -----------------------------------
[ INFO] 2019-10-08 20:06:36 : CRBB hits                    138443
[ INFO] 2019-10-08 20:06:36 : n contigs with CRBB          138443
[ INFO] 2019-10-08 20:06:36 : p contigs with CRBB            0.51
[ INFO] 2019-10-08 20:06:36 : rbh per reference              2.81
[ INFO] 2019-10-08 20:06:36 : n refs with CRBB              25739
[ INFO] 2019-10-08 20:06:36 : p refs with CRBB               0.52
[ INFO] 2019-10-08 20:06:36 : cov25                         23721
[ INFO] 2019-10-08 20:06:36 : p cov25                        0.48
[ INFO] 2019-10-08 20:06:36 : cov50                         21875
[ INFO] 2019-10-08 20:06:36 : p cov50                        0.44
[ INFO] 2019-10-08 20:06:36 : cov75                         19402
[ INFO] 2019-10-08 20:06:36 : p cov75                        0.39
[ INFO] 2019-10-08 20:06:36 : cov85                         17972
[ INFO] 2019-10-08 20:06:36 : p cov85                        0.36
[ INFO] 2019-10-08 20:06:36 : cov95                         15664
[ INFO] 2019-10-08 20:06:36 : p cov95                        0.32
[ INFO] 2019-10-08 20:06:36 : reference coverage             0.56
[ INFO] 2019-10-08 20:06:36 : Comparative metrics done in 114 seconds
[ INFO] 2019-10-08 20:06:36 : -----------------------------------
[ INFO] 2019-10-08 20:06:36 : Writing contig metrics for each contig to /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/output/PW363_initial_transrate_usingReference/PW363/contigs.csv
[ INFO] 2019-10-08 20:06:54 : Writing analysis results to assemblies.csv