[ INFO] 2019-10-08 20:00:24 : Loading assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/input/Desiree.cds
[ INFO] 2019-10-08 20:00:44 : Analysing assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/input/Desiree.cds
[ INFO] 2019-10-08 20:00:44 : Results will be saved in /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/output/Desiree_initial_transrate_usingReference/Desiree
[ INFO] 2019-10-08 20:00:44 : Calculating contig metrics...
[ INFO] 2019-10-08 20:01:14 : Contig metrics:
[ INFO] 2019-10-08 20:01:14 : -----------------------------------
[ INFO] 2019-10-08 20:01:14 : n seqs                       350271
[ INFO] 2019-10-08 20:01:14 : smallest                         93
[ INFO] 2019-10-08 20:01:14 : largest                       15315
[ INFO] 2019-10-08 20:01:14 : n bases                   193804749
[ INFO] 2019-10-08 20:01:14 : mean len                      504.5
[ INFO] 2019-10-08 20:01:14 : n under 200                  125465
[ INFO] 2019-10-08 20:01:14 : n over 1k                     57679
[ INFO] 2019-10-08 20:01:14 : n over 10k                       23
[ INFO] 2019-10-08 20:01:14 : n with orf                   132959
[ INFO] 2019-10-08 20:01:14 : mean orf percent              99.75
[ INFO] 2019-10-08 20:01:14 : n90                             369
[ INFO] 2019-10-08 20:01:14 : n70                             753
[ INFO] 2019-10-08 20:01:14 : n50                            1194
[ INFO] 2019-10-08 20:01:14 : n30                            1797
[ INFO] 2019-10-08 20:01:14 : n10                            5100
[ INFO] 2019-10-08 20:01:14 : gc                             0.41
[ INFO] 2019-10-08 20:01:14 : gc skew                        0.07
[ INFO] 2019-10-08 20:01:14 : at skew                        0.02
[ INFO] 2019-10-08 20:01:14 : cpg ratio                      1.47
[ INFO] 2019-10-08 20:01:14 : bases n                       81812
[ INFO] 2019-10-08 20:01:14 : proportion n                    0.0
[ INFO] 2019-10-08 20:01:14 : linguistic complexity          0.11
[ INFO] 2019-10-08 20:01:14 : Contig metrics done in 31 seconds
[ INFO] 2019-10-08 20:01:14 : No reads provided, skipping read diagnostics
[ INFO] 2019-10-08 20:01:14 : Calculating comparative metrics...
[ INFO] 2019-10-08 20:03:36 : Comparative metrics:
[ INFO] 2019-10-08 20:03:36 : -----------------------------------
[ INFO] 2019-10-08 20:03:36 : CRBB hits                    160295
[ INFO] 2019-10-08 20:03:36 : n contigs with CRBB          160295
[ INFO] 2019-10-08 20:03:36 : p contigs with CRBB            0.46
[ INFO] 2019-10-08 20:03:36 : rbh per reference              3.25
[ INFO] 2019-10-08 20:03:36 : n refs with CRBB              29858
[ INFO] 2019-10-08 20:03:36 : p refs with CRBB               0.61
[ INFO] 2019-10-08 20:03:36 : cov25                         27856
[ INFO] 2019-10-08 20:03:36 : p cov25                        0.56
[ INFO] 2019-10-08 20:03:36 : cov50                         25991
[ INFO] 2019-10-08 20:03:36 : p cov50                        0.53
[ INFO] 2019-10-08 20:03:36 : cov75                         23309
[ INFO] 2019-10-08 20:03:36 : p cov75                        0.47
[ INFO] 2019-10-08 20:03:36 : cov85                         21828
[ INFO] 2019-10-08 20:03:36 : p cov85                        0.44
[ INFO] 2019-10-08 20:03:36 : cov95                         19329
[ INFO] 2019-10-08 20:03:36 : p cov95                        0.39
[ INFO] 2019-10-08 20:03:36 : reference coverage             0.65
[ INFO] 2019-10-08 20:03:36 : Comparative metrics done in 141 seconds
[ INFO] 2019-10-08 20:03:36 : -----------------------------------
[ INFO] 2019-10-08 20:03:36 : Writing contig metrics for each contig to /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_02.6_transrate/output/Desiree_initial_transrate_usingReference/Desiree/contigs.csv
[ INFO] 2019-10-08 20:04:01 : Writing analysis results to assemblies.csv