# BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe10.fasta -o BUSCOtran.n_CLCdnDe10.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe10.fasta # BUSCO was run in mode: transcriptome C:55.5%[S:53.0%,D:2.5%],F:23.1%,M:21.4%,n:1440 799 Complete BUSCOs (C) 763 Complete and single-copy BUSCOs (S) 36 Complete and duplicated BUSCOs (D) 333 Fragmented BUSCOs (F) 308 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe11.fasta -o BUSCOtran.n_CLCdnDe11.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe11.fasta # BUSCO was run in mode: transcriptome C:59.3%[S:56.9%,D:2.4%],F:22.7%,M:18.0%,n:1440 853 Complete BUSCOs (C) 819 Complete and single-copy BUSCOs (S) 34 Complete and duplicated BUSCOs (D) 327 Fragmented BUSCOs (F) 260 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe12.fasta -o BUSCOtran.n_CLCdnDe12.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe12.fasta # BUSCO was run in mode: transcriptome C:59.5%[S:56.7%,D:2.8%],F:24.1%,M:16.4%,n:1440 858 Complete BUSCOs (C) 817 Complete and single-copy BUSCOs (S) 41 Complete and duplicated BUSCOs (D) 347 Fragmented BUSCOs (F) 235 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe13.fasta -o BUSCOtran.n_CLCdnDe13.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe13.fasta # BUSCO was run in mode: transcriptome C:60.0%[S:57.2%,D:2.8%],F:24.1%,M:15.9%,n:1440 863 Complete BUSCOs (C) 823 Complete and single-copy BUSCOs (S) 40 Complete and duplicated BUSCOs (D) 347 Fragmented BUSCOs (F) 230 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe14.fasta -o BUSCOtran.n_CLCdnDe14.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe14.fasta # BUSCO was run in mode: transcriptome C:56.5%[S:53.6%,D:2.9%],F:24.0%,M:19.5%,n:1440 814 Complete BUSCOs (C) 772 Complete and single-copy BUSCOs (S) 42 Complete and duplicated BUSCOs (D) 345 Fragmented BUSCOs (F) 281 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe1.fasta -o BUSCOtran.n_CLCdnDe1.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe1.fasta # BUSCO was run in mode: transcriptome C:37.9%[S:33.0%,D:4.9%],F:24.4%,M:37.7%,n:1440 546 Complete BUSCOs (C) 475 Complete and single-copy BUSCOs (S) 71 Complete and duplicated BUSCOs (D) 351 Fragmented BUSCOs (F) 543 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe2.fasta -o BUSCOtran.n_CLCdnDe2.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe2.fasta # BUSCO was run in mode: transcriptome C:54.9%[S:52.1%,D:2.8%],F:23.8%,M:21.3%,n:1440 790 Complete BUSCOs (C) 750 Complete and single-copy BUSCOs (S) 40 Complete and duplicated BUSCOs (D) 342 Fragmented BUSCOs (F) 308 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe3.fasta -o BUSCOtran.n_CLCdnDe3.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe3.fasta # BUSCO was run in mode: transcriptome C:57.4%[S:54.3%,D:3.1%],F:22.3%,M:20.3%,n:1440 827 Complete BUSCOs (C) 782 Complete and single-copy BUSCOs (S) 45 Complete and duplicated BUSCOs (D) 321 Fragmented BUSCOs (F) 292 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe4.fasta -o BUSCOtran.n_CLCdnDe4.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe4.fasta # BUSCO was run in mode: transcriptome C:64.4%[S:60.6%,D:3.8%],F:20.4%,M:15.2%,n:1440 927 Complete BUSCOs (C) 872 Complete and single-copy BUSCOs (S) 55 Complete and duplicated BUSCOs (D) 294 Fragmented BUSCOs (F) 219 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe5.fasta -o BUSCOtran.n_CLCdnDe5.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe5.fasta # BUSCO was run in mode: transcriptome C:67.1%[S:62.4%,D:4.7%],F:21.1%,M:11.8%,n:1440 966 Complete BUSCOs (C) 898 Complete and single-copy BUSCOs (S) 68 Complete and duplicated BUSCOs (D) 304 Fragmented BUSCOs (F) 170 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe6.fasta -o BUSCOtran.n_CLCdnDe6.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe6.fasta # BUSCO was run in mode: transcriptome C:71.7%[S:66.3%,D:5.4%],F:17.4%,M:10.9%,n:1440 1032 Complete BUSCOs (C) 954 Complete and single-copy BUSCOs (S) 78 Complete and duplicated BUSCOs (D) 250 Fragmented BUSCOs (F) 158 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe7.fasta -o BUSCOtran.n_CLCdnDe7.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe7.fasta # BUSCO was run in mode: transcriptome C:72.5%[S:65.3%,D:7.2%],F:16.8%,M:10.7%,n:1440 1044 Complete BUSCOs (C) 941 Complete and single-copy BUSCOs (S) 103 Complete and duplicated BUSCOs (D) 242 Fragmented BUSCOs (F) 154 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe8.fasta -o BUSCOtran.n_CLCdnDe8.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe8.fasta # BUSCO was run in mode: transcriptome C:5.4%[S:5.3%,D:0.1%],F:12.3%,M:82.3%,n:1440 78 Complete BUSCOs (C) 76 Complete and single-copy BUSCOs (S) 2 Complete and duplicated BUSCOs (D) 177 Fragmented BUSCOs (F) 1185 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_CLCdnDe9.fasta -o BUSCOtran.n_CLCdnDe9.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_CLCdnDe9.fasta # BUSCO was run in mode: transcriptome C:51.1%[S:48.9%,D:2.2%],F:25.1%,M:23.8%,n:1440 736 Complete BUSCOs (C) 704 Complete and single-copy BUSCOs (S) 32 Complete and duplicated BUSCOs (D) 362 Fragmented BUSCOs (F) 342 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_Trinity.fasta -o BUSCOtran.n_Trinity.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_Trinity.fasta # BUSCO was run in mode: transcriptome C:73.2%[S:47.0%,D:26.2%],F:14.7%,M:12.1%,n:1440 1054 Complete BUSCOs (C) 677 Complete and single-copy BUSCOs (S) 377 Complete and duplicated BUSCOs (D) 211 Fragmented BUSCOs (F) 175 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_VdnDe10.fasta -o BUSCOtran.n_VdnDe10.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_VdnDe10.fasta # BUSCO was run in mode: transcriptome C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1440 0 Complete BUSCOs (C) 0 Complete and single-copy BUSCOs (S) 0 Complete and duplicated BUSCOs (D) 0 Fragmented BUSCOs (F) 1440 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_VdnDe2.fasta -o BUSCOtran.n_VdnDe2.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_VdnDe2.fasta # BUSCO was run in mode: transcriptome C:75.3%[S:15.4%,D:59.9%],F:15.6%,M:9.1%,n:1440 1084 Complete BUSCOs (C) 222 Complete and single-copy BUSCOs (S) 862 Complete and duplicated BUSCOs (D) 225 Fragmented BUSCOs (F) 131 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_VdnDe3.fasta -o BUSCOtran.n_VdnDe3.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_VdnDe3.fasta # BUSCO was run in mode: transcriptome C:78.4%[S:17.4%,D:61.0%],F:13.2%,M:8.4%,n:1440 1130 Complete BUSCOs (C) 251 Complete and single-copy BUSCOs (S) 879 Complete and duplicated BUSCOs (D) 190 Fragmented BUSCOs (F) 120 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_VdnDe4.fasta -o BUSCOtran.n_VdnDe4.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_VdnDe4.fasta # BUSCO was run in mode: transcriptome C:79.5%[S:16.2%,D:63.3%],F:11.5%,M:9.0%,n:1440 1144 Complete BUSCOs (C) 233 Complete and single-copy BUSCOs (S) 911 Complete and duplicated BUSCOs (D) 165 Fragmented BUSCOs (F) 131 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_VdnDe5.fasta -o BUSCOtran.n_VdnDe5.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_VdnDe5.fasta # BUSCO was run in mode: transcriptome C:77.8%[S:15.6%,D:62.2%],F:10.8%,M:11.4%,n:1440 1120 Complete BUSCOs (C) 225 Complete and single-copy BUSCOs (S) 895 Complete and duplicated BUSCOs (D) 156 Fragmented BUSCOs (F) 164 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_VdnDe6.fasta -o BUSCOtran.n_VdnDe6.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_VdnDe6.fasta # BUSCO was run in mode: transcriptome C:67.7%[S:18.3%,D:49.4%],F:15.3%,M:17.0%,n:1440 976 Complete BUSCOs (C) 264 Complete and single-copy BUSCOs (S) 712 Complete and duplicated BUSCOs (D) 221 Fragmented BUSCOs (F) 243 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_VdnDe7.fasta -o BUSCOtran.n_VdnDe7.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_VdnDe7.fasta # BUSCO was run in mode: transcriptome C:36.3%[S:22.8%,D:13.5%],F:26.0%,M:37.7%,n:1440 523 Complete BUSCOs (C) 328 Complete and single-copy BUSCOs (S) 195 Complete and duplicated BUSCOs (D) 374 Fragmented BUSCOs (F) 543 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_VdnDe8.fasta -o BUSCOtran.n_VdnDe8.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_VdnDe8.fasta # BUSCO was run in mode: transcriptome C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1440 0 Complete BUSCOs (C) 0 Complete and single-copy BUSCOs (S) 0 Complete and duplicated BUSCOs (D) 0 Fragmented BUSCOs (F) 1440 Missing BUSCOs (M) 1440 Total BUSCO groups searched # BUSCO version is: 3.0.2 # The lineage dataset is: embryophyta_odb9 (Creation date: 2016-02-13, number of species: 30, number of BUSCOs: 1440) # To reproduce this run: python /where/is/your/local/busco-folder/busco/scripts/run_BUSCO.py -i ../../../_S_02_denovo/Desiree/n_VdnDe9.fasta -o BUSCOtran.n_VdnDe9.fasta -l ../../../../../../buscoDB/embryophyta_odb9/ -m transcriptome -c 8 # # Summarized benchmarking in BUSCO notation for file ../../../_S_02_denovo/Desiree/n_VdnDe9.fasta # BUSCO was run in mode: transcriptome C:0.0%[S:0.0%,D:0.0%],F:0.0%,M:100.0%,n:1440 0 Complete BUSCOs (C) 0 Complete and single-copy BUSCOs (S) 0 Complete and duplicated BUSCOs (D) 0 Fragmented BUSCOs (F) 1440 Missing BUSCOs (M) 1440 Total BUSCO groups searched