[ INFO] 2019-10-08 13:22:43 : Loading assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_03.2_components/output/fasta_2_all-per-cv/stCuSTr-P_cds_all.fasta
[ INFO] 2019-10-08 13:22:50 : Analysing assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_03.2_components/output/fasta_2_all-per-cv/stCuSTr-P_cds_all.fasta
[ INFO] 2019-10-08 13:22:50 : Results will be saved in /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_04_transrate/output/PW363_transrate_usingReference/stCuSTr-P_cds_all
[ INFO] 2019-10-08 13:22:50 : Calculating contig metrics...
[ INFO] 2019-10-08 13:23:05 : Contig metrics:
[ INFO] 2019-10-08 13:23:05 : -----------------------------------
[ INFO] 2019-10-08 13:23:05 : n seqs                       159278
[ INFO] 2019-10-08 13:23:05 : smallest                         93
[ INFO] 2019-10-08 13:23:05 : largest                       10956
[ INFO] 2019-10-08 13:23:05 : n bases                   125766519
[ INFO] 2019-10-08 13:23:05 : mean len                      774.5
[ INFO] 2019-10-08 13:23:05 : n under 200                   17370
[ INFO] 2019-10-08 13:23:05 : n over 1k                     42571
[ INFO] 2019-10-08 13:23:05 : n over 10k                        3
[ INFO] 2019-10-08 13:23:05 : n with orf                   100222
[ INFO] 2019-10-08 13:23:05 : mean orf percent              99.79
[ INFO] 2019-10-08 13:23:05 : n90                             429
[ INFO] 2019-10-08 13:23:05 : n70                             771
[ INFO] 2019-10-08 13:23:05 : n50                            1131
[ INFO] 2019-10-08 13:23:05 : n30                            1596
[ INFO] 2019-10-08 13:23:05 : n10                            2751
[ INFO] 2019-10-08 13:23:05 : gc                             0.42
[ INFO] 2019-10-08 13:23:05 : gc skew                        0.09
[ INFO] 2019-10-08 13:23:05 : at skew                        0.02
[ INFO] 2019-10-08 13:23:05 : cpg ratio                      1.48
[ INFO] 2019-10-08 13:23:05 : bases n                       57119
[ INFO] 2019-10-08 13:23:05 : proportion n                    0.0
[ INFO] 2019-10-08 13:23:05 : linguistic complexity          0.15
[ INFO] 2019-10-08 13:23:05 : Contig metrics done in 15 seconds
[ INFO] 2019-10-08 13:23:05 : No reads provided, skipping read diagnostics
[ INFO] 2019-10-08 13:23:05 : Calculating comparative metrics...
[ INFO] 2019-10-08 13:24:07 : Comparative metrics:
[ INFO] 2019-10-08 13:24:07 : -----------------------------------
[ INFO] 2019-10-08 13:24:07 : CRBB hits                    116834
[ INFO] 2019-10-08 13:24:07 : n contigs with CRBB          116834
[ INFO] 2019-10-08 13:24:07 : p contigs with CRBB            0.73
[ INFO] 2019-10-08 13:24:07 : rbh per reference              2.37
[ INFO] 2019-10-08 13:24:07 : n refs with CRBB              23839
[ INFO] 2019-10-08 13:24:07 : p refs with CRBB               0.48
[ INFO] 2019-10-08 13:24:07 : cov25                         22317
[ INFO] 2019-10-08 13:24:07 : p cov25                        0.45
[ INFO] 2019-10-08 13:24:07 : cov50                         20620
[ INFO] 2019-10-08 13:24:07 : p cov50                        0.42
[ INFO] 2019-10-08 13:24:07 : cov75                         18188
[ INFO] 2019-10-08 13:24:07 : p cov75                        0.37
[ INFO] 2019-10-08 13:24:07 : cov85                         16840
[ INFO] 2019-10-08 13:24:07 : p cov85                        0.34
[ INFO] 2019-10-08 13:24:07 : cov95                         14727
[ INFO] 2019-10-08 13:24:07 : p cov95                         0.3
[ INFO] 2019-10-08 13:24:07 : reference coverage             0.54
[ INFO] 2019-10-08 13:24:07 : Comparative metrics done in 62 seconds
[ INFO] 2019-10-08 13:24:07 : -----------------------------------
[ INFO] 2019-10-08 13:24:07 : Writing contig metrics for each contig to /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_04_transrate/output/PW363_transrate_usingReference/stCuSTr-P_cds_all/contigs.csv
[ INFO] 2019-10-08 13:24:22 : Writing analysis results to assemblies.csv