[ INFO] 2019-10-08 13:20:37 : Loading assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_03.2_components/output/fasta_2_all-per-cv/stCuSTr-D_cds_all.fasta
[ INFO] 2019-10-08 13:20:46 : Analysing assembly: /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_03.2_components/output/fasta_2_all-per-cv/stCuSTr-D_cds_all.fasta
[ INFO] 2019-10-08 13:20:46 : Results will be saved in /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_04_transrate/output/Desiree_transrate_usingReference/stCuSTr-D_cds_all
[ INFO] 2019-10-08 13:20:46 : Calculating contig metrics...
[ INFO] 2019-10-08 13:21:06 : Contig metrics:
[ INFO] 2019-10-08 13:21:06 : -----------------------------------
[ INFO] 2019-10-08 13:21:06 : n seqs                       197839
[ INFO] 2019-10-08 13:21:06 : smallest                         93
[ INFO] 2019-10-08 13:21:06 : largest                       15315
[ INFO] 2019-10-08 13:21:06 : n bases                   160243350
[ INFO] 2019-10-08 13:21:06 : mean len                     792.32
[ INFO] 2019-10-08 13:21:06 : n under 200                   25330
[ INFO] 2019-10-08 13:21:06 : n over 1k                     55837
[ INFO] 2019-10-08 13:21:06 : n over 10k                       23
[ INFO] 2019-10-08 13:21:06 : n with orf                   123546
[ INFO] 2019-10-08 13:21:06 : mean orf percent              99.79
[ INFO] 2019-10-08 13:21:06 : n90                             444
[ INFO] 2019-10-08 13:21:06 : n70                             819
[ INFO] 2019-10-08 13:21:06 : n50                            1209
[ INFO] 2019-10-08 13:21:06 : n30                            1704
[ INFO] 2019-10-08 13:21:06 : n10                            2952
[ INFO] 2019-10-08 13:21:06 : gc                             0.42
[ INFO] 2019-10-08 13:21:06 : gc skew                        0.09
[ INFO] 2019-10-08 13:21:06 : at skew                        0.02
[ INFO] 2019-10-08 13:21:06 : cpg ratio                      1.47
[ INFO] 2019-10-08 13:21:06 : bases n                       59950
[ INFO] 2019-10-08 13:21:06 : proportion n                    0.0
[ INFO] 2019-10-08 13:21:06 : linguistic complexity          0.15
[ INFO] 2019-10-08 13:21:06 : Contig metrics done in 20 seconds
[ INFO] 2019-10-08 13:21:06 : No reads provided, skipping read diagnostics
[ INFO] 2019-10-08 13:21:06 : Calculating comparative metrics...
[ INFO] 2019-10-08 13:22:23 : Comparative metrics:
[ INFO] 2019-10-08 13:22:23 : -----------------------------------
[ INFO] 2019-10-08 13:22:23 : CRBB hits                    138131
[ INFO] 2019-10-08 13:22:23 : n contigs with CRBB          138131
[ INFO] 2019-10-08 13:22:23 : p contigs with CRBB             0.7
[ INFO] 2019-10-08 13:22:23 : rbh per reference               2.8
[ INFO] 2019-10-08 13:22:23 : n refs with CRBB              27642
[ INFO] 2019-10-08 13:22:23 : p refs with CRBB               0.56
[ INFO] 2019-10-08 13:22:23 : cov25                         26231
[ INFO] 2019-10-08 13:22:23 : p cov25                        0.53
[ INFO] 2019-10-08 13:22:23 : cov50                         24586
[ INFO] 2019-10-08 13:22:23 : p cov50                         0.5
[ INFO] 2019-10-08 13:22:23 : cov75                         22027
[ INFO] 2019-10-08 13:22:23 : p cov75                        0.45
[ INFO] 2019-10-08 13:22:23 : cov85                         20603
[ INFO] 2019-10-08 13:22:23 : p cov85                        0.42
[ INFO] 2019-10-08 13:22:23 : cov95                         18246
[ INFO] 2019-10-08 13:22:23 : p cov95                        0.37
[ INFO] 2019-10-08 13:22:23 : reference coverage             0.63
[ INFO] 2019-10-08 13:22:23 : Comparative metrics done in 77 seconds
[ INFO] 2019-10-08 13:22:23 : -----------------------------------
[ INFO] 2019-10-08 13:22:23 : Writing contig metrics for each contig to /DATA/majaz/_I_STRT/_S_03_stCuSTr/_A_04_transrate/output/Desiree_transrate_usingReference/stCuSTr-D_cds_all/contigs.csv
[ INFO] 2019-10-08 13:22:39 : Writing analysis results to assemblies.csv